Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d046135_circ_g.2 |
ID in PlantcircBase | zma_circ_009953 |
Alias | zma_circ_0003234, GRMZM2G072909_C1 |
Organism | Zea mays |
Position | chr9: 65842182-65842601 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d046135 |
Parent gene annotation |
Protein DJ-1 homolog B |
Parent gene strand | - |
Alternative splicing | Zm00001d046135_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d046135_T003:2 Zm00001d046135_T001:2 Zm00001d046135_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.380499779 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
65842537-65842220(+) 65842597-65842184(-) 65842221-65842534(-) |
Potential amino acid sequence |
MFFDHFLQNFALSKSRRTRHPSHWPSNFFSFFLSI*(+) MPGSSTFGECKVLEKMVKKHVEKGKLYAAICAAPAMTLGTWGLLNGLKATCYPSFIDKLPSEVH AVESRVQIDGKCMTSRGPGTAMEYSVILVEQLYGKEKAKEVAGPMGGMPGSSTFGECKVLEKMV KKHVEKGKLYAAICAAPAMTLGTWGLLNGLKATCYPSFIDKLPSEVHAVESRVQIDGKCMTSRG PGTAMEYSVILVEQLYGKEKAKEVAGPMGGMPGSSTFGECKVLEKMVKKHVEKGKLYAAICAAP AMTLGTWGLLNGLKATCYPSFIDKLPSEVHAVESRVQIDGKCMTSRGPGTAMEYSVILVEQLYG KEKAKEVAGPMGGMPGSSTFGECKVLEKMVKKHVEKGKLYAAICAAPAMTLGTWGLLNGLKATC YPSFIDKLPSEVHAVESRVQIDGKCMTSRGPGTAMEYSVILVEQLYGKEKAKEVAGPM(-) MERKKLKKLLGQWEGCLVLRLLESAKFWRKWSKNM*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |