Plant Circular RNA Database

Detail information of Os10g0497600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os10g0497600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_007322
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 18971418-18973883  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0497600						
					
						Parent gene annotation
						
							Serine/threonine protein kinase-related domain containing protei
n. (Os10t0497600-01);Serine/threonine protein kinase-related dom
ain containing protein. (Os10t0497600-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os10g0497600_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0497600-02:4
Os10t0497600-01:4

General Information
CircRNA Name	Os10g0497600_circ_g.1
ID in PlantcircBase	osa_circ_007322
Alias	NA
Organism	Oryza sativa
Position	chr10: 18971418-18973883 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0497600
Parent gene annotation	Serine/threonine protein kinase-related domain containing protei n. (Os10t0497600-01);Serine/threonine protein kinase-related dom ain containing protein. (Os10t0497600-02)
Parent gene strand	+
Alternative splicing	Os10g0497600_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0497600-02:4 Os10t0497600-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGATGAAGAATTCAATGGCAAACTTTCTGATTTTGGCTTGGCTAAGATGCTGGGTGCAGGGAA
GAGCCATATCACAACTCGAGTTATGGGAACTTTTGGgttgttgagaagtgaagatgtcgacagg
tgaaaccctgcgtgcagagctatcatccaggacgccgcctttcggtttgaggctatggattgtg
attggaat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTGTTGAGAAGTGAAGATGTCGACAGGTGAAACCCTGCGTGCAGAGCTATCATCCAGGACGCC
GCCTTTCGGTTTGAGGCTATGGATTGTGATTGGAATCAGTATTTGGGTGGTGATCTTCTTTATA
CTAGGTTTCATGTGCCTCTGGTCCATATACCGAAGGAAGCCGAAGAAGTCCTTTGATAAGATTC
CAGTATCTCAAATCCCGGATGTTTCCAAGGAGATTGCAGTAGATGAAGTTCGTGAGCATGCTGT
TGTCGAAAACTTCCGTGTGCAAGAAAGCCACGCGATATCGGTGCAGGAGAAACATTACGAGAAA
GATTCAGGGAAAATGCTGGCACACTTGGTTAGGAGTAAATCGAGTGATGCCGATAATTTGAGCC
AATGCAGCTCGGTGTACCAATGTGATAGGGCTGGTAGCTCGTATTCTGGTGATGAAGGCAGCTC
GGGCAATGCTAGGAGGCACTTTTCTCAATATGCAACTGTCTCAGCATCCCCTCTGGTTGGTCTC
CCAGAATTCTCTCATCTGGGCTGGGGTCATTGGTTTACTCTGAGAGATTTGGAGCATGCAACAA
ATCGGTTTTCCAAGGAGAATGTCATTGGAGAGGGTGGATATGGGGTAGTTTACCGTGGTCGACT
CATAAATGGAACTGACGTCGCAATAAAGAAGCTTCTTAATAATATGTAAGAGATCCTGAAATCT
ATTCTGCGTTTTACAGAACTTGTGACTCCTTCTGATGCCATCATATTAATTTTCTTTTGATATG
GTGCTGCAGGGGCCAGGCAGAAAAGGAGTTCAGGGTTGAAGTTGAGGCTATTGGCCACGTCAGG
CATAAGAATCTTGTCCGCCTTCTAGGATATTGTGTTGAGGGAATCCACAGGTAAAGCTATTTAT
CAATCACCTTTGCTGATGGATGGCTAGCTTTTGTTTCTACTGGCACATTATTTACTTGCATAGG
GATGTAGGATTGCTCTTGGTCTATGTCCACCTACTCACCAGATTATCTCAAGGGATAGGTTATT
CCTGACTGCACTCCTTATGCTATCGATTTTTTCCCTTCCAAATCTGATGGTGGGATTCAGCATG
CCCAGTGACAGATTATGCTCAGTCCACAGAAACCTTCTTTGGACCACCATTCTTTTACCATGAA
AATGTGGCCATAGCTCTGAAAGCTAGGATTCACTAGAAGCGCACAACTGCTTATTGGTTTGTTA
GTTGGCTATAACAAGGTCTTACTGAAATGTACTTCCATAGTTCATTACTTTGTGAATGCCTGTT
CTTGTTCTTCACGTTTCTTCTCATGCATGTTCAATTCTAAATTTGTATTCATGATATGTCCAAG
CTACTGTATTCTCCAAAGAAAATCAGAAGTCCATTCACCTATGTATTTTCCAGTTTTCCGCCAT
TTTGGATACTGCTCTAGAAACAAGTTAATAATATAGATATTTATATGGTTTGGCCAGTGCTGCT
TAAGTGACCATCGAGATAGAAATTGCTTAAGAAATATACTAAGATGTTGAGTGTCAGGTGTTTT
CGGATAATCTAGTTACCAACAAATAGGTCCTATGAATATAATGGTGTCTGCTTCACGTAATTCA
AAATCCACACTCAGCCAAAATAATCTGCAATAGGGTGTTGAAAATATGATTATGTTTCTCCCTT
GTTTTCATCATGACTACAGAAATGAACAATGTTGCTACATCTTGTAATAATTTGTGGTTTTCAA
TTGAACAAAACATCCATCAAATGATATCTACAGCAATATATTTTGCACTTCTGAGCACACAATA
GGTTTGAGTGTATTCGAGTCATGGTCATTGATTTAAGCTTTTTATTTCACTACATAACCATTGA
TTTGAGTGTATCTAAGGAGTTCTGTTTCCACAAGTACTTTATGTTAATGGTGTCTCCTTATGCT
TTGGCCATCCAAACTCATTACTGTTGTTTAATATTTTTAGTGGTTAGTGGTGTCCAAATCTTTC
TTTGTGTACATCATACTATGTTTTTGTAGTCTATTAAACTTCCATCCTATCATCTGACTTGTTA
TATTCCAGGATGCTTGTATACGAATATGTGAATAACGGGAACTTAGAACAGTGGCTTCATGGTG
CCATGCGCCAACATGGTGTTCTTACCTGGGAAGCCCGAATGAAAGTTGTTCTTGGAATTGCTAA
AGCGTAAGAAACAAACCATCGTCCCCGTCAAAAAGAAAAGAATTGTTCTTCACTTTAGCTCTTT
TATATGTATATGTTTAGTTGCATAACCCATTTTCCATAACTGAATTGGTATACAGGCTTGCTTA
TTTACATGAAGCAATAGAGCCAAAAGTTGTACACCGGGATATCAAATCAAGCAACATACTAATC
GATGAAGAATTCAATGGCAAACTTTCTGATTTTGGCTTGGCTAAGATGCTGGGTGCAGGGAAGA
GCCATATCACAACTCGAGTTATGGGAACTTTTGG
						
					

			
		

Sequences
Splice junction sequence	TCGATGAAGAATTCAATGGCAAACTTTCTGATTTTGGCTTGGCTAAGATGCTGGGTGCAGGGAA GAGCCATATCACAACTCGAGTTATGGGAACTTTTGGgttgttgagaagtgaagatgtcgacagg tgaaaccctgcgtgcagagctatcatccaggacgccgcctttcggtttgaggctatggattgtg attggaat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTGTTGAGAAGTGAAGATGTCGACAGGTGAAACCCTGCGTGCAGAGCTATCATCCAGGACGCC GCCTTTCGGTTTGAGGCTATGGATTGTGATTGGAATCAGTATTTGGGTGGTGATCTTCTTTATA CTAGGTTTCATGTGCCTCTGGTCCATATACCGAAGGAAGCCGAAGAAGTCCTTTGATAAGATTC CAGTATCTCAAATCCCGGATGTTTCCAAGGAGATTGCAGTAGATGAAGTTCGTGAGCATGCTGT TGTCGAAAACTTCCGTGTGCAAGAAAGCCACGCGATATCGGTGCAGGAGAAACATTACGAGAAA GATTCAGGGAAAATGCTGGCACACTTGGTTAGGAGTAAATCGAGTGATGCCGATAATTTGAGCC AATGCAGCTCGGTGTACCAATGTGATAGGGCTGGTAGCTCGTATTCTGGTGATGAAGGCAGCTC GGGCAATGCTAGGAGGCACTTTTCTCAATATGCAACTGTCTCAGCATCCCCTCTGGTTGGTCTC CCAGAATTCTCTCATCTGGGCTGGGGTCATTGGTTTACTCTGAGAGATTTGGAGCATGCAACAA ATCGGTTTTCCAAGGAGAATGTCATTGGAGAGGGTGGATATGGGGTAGTTTACCGTGGTCGACT CATAAATGGAACTGACGTCGCAATAAAGAAGCTTCTTAATAATATGTAAGAGATCCTGAAATCT ATTCTGCGTTTTACAGAACTTGTGACTCCTTCTGATGCCATCATATTAATTTTCTTTTGATATG GTGCTGCAGGGGCCAGGCAGAAAAGGAGTTCAGGGTTGAAGTTGAGGCTATTGGCCACGTCAGG CATAAGAATCTTGTCCGCCTTCTAGGATATTGTGTTGAGGGAATCCACAGGTAAAGCTATTTAT CAATCACCTTTGCTGATGGATGGCTAGCTTTTGTTTCTACTGGCACATTATTTACTTGCATAGG GATGTAGGATTGCTCTTGGTCTATGTCCACCTACTCACCAGATTATCTCAAGGGATAGGTTATT CCTGACTGCACTCCTTATGCTATCGATTTTTTCCCTTCCAAATCTGATGGTGGGATTCAGCATG CCCAGTGACAGATTATGCTCAGTCCACAGAAACCTTCTTTGGACCACCATTCTTTTACCATGAA AATGTGGCCATAGCTCTGAAAGCTAGGATTCACTAGAAGCGCACAACTGCTTATTGGTTTGTTA GTTGGCTATAACAAGGTCTTACTGAAATGTACTTCCATAGTTCATTACTTTGTGAATGCCTGTT CTTGTTCTTCACGTTTCTTCTCATGCATGTTCAATTCTAAATTTGTATTCATGATATGTCCAAG CTACTGTATTCTCCAAAGAAAATCAGAAGTCCATTCACCTATGTATTTTCCAGTTTTCCGCCAT TTTGGATACTGCTCTAGAAACAAGTTAATAATATAGATATTTATATGGTTTGGCCAGTGCTGCT TAAGTGACCATCGAGATAGAAATTGCTTAAGAAATATACTAAGATGTTGAGTGTCAGGTGTTTT CGGATAATCTAGTTACCAACAAATAGGTCCTATGAATATAATGGTGTCTGCTTCACGTAATTCA AAATCCACACTCAGCCAAAATAATCTGCAATAGGGTGTTGAAAATATGATTATGTTTCTCCCTT GTTTTCATCATGACTACAGAAATGAACAATGTTGCTACATCTTGTAATAATTTGTGGTTTTCAA TTGAACAAAACATCCATCAAATGATATCTACAGCAATATATTTTGCACTTCTGAGCACACAATA GGTTTGAGTGTATTCGAGTCATGGTCATTGATTTAAGCTTTTTATTTCACTACATAACCATTGA TTTGAGTGTATCTAAGGAGTTCTGTTTCCACAAGTACTTTATGTTAATGGTGTCTCCTTATGCT TTGGCCATCCAAACTCATTACTGTTGTTTAATATTTTTAGTGGTTAGTGGTGTCCAAATCTTTC TTTGTGTACATCATACTATGTTTTTGTAGTCTATTAAACTTCCATCCTATCATCTGACTTGTTA TATTCCAGGATGCTTGTATACGAATATGTGAATAACGGGAACTTAGAACAGTGGCTTCATGGTG CCATGCGCCAACATGGTGTTCTTACCTGGGAAGCCCGAATGAAAGTTGTTCTTGGAATTGCTAA AGCGTAAGAAACAAACCATCGTCCCCGTCAAAAAGAAAAGAATTGTTCTTCACTTTAGCTCTTT TATATGTATATGTTTAGTTGCATAACCCATTTTCCATAACTGAATTGGTATACAGGCTTGCTTA TTTACATGAAGCAATAGAGCCAAAAGTTGTACACCGGGATATCAAATCAAGCAACATACTAATC GATGAAGAATTCAATGGCAAACTTTCTGATTTTGGCTTGGCTAAGATGCTGGGTGCAGGGAAGA GCCATATCACAACTCGAGTTATGGGAACTTTTGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.537005551

Conservation Information
Conserved circRNAs	NA
PMCS	0.537005551

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							18973788-18971422(+)
18971436-18971445(+)
18971573-18973782(-)
18971473-18973721(-)
						
						Potential amino acid sequence
						
							MKNSMANFLILAWLRCWVQGRAISQLELWELLGC*(+)
MSTGETLRAELSSRTPPFGLRLWIVIGISIWVVIFFILGFMCLWSIYRRKPKKSFDKIPVSQIP
DVSKEIAVDEVREHAVVENFRVQESHAISVQEKHYEKDSGKMLAHLVRSKSSDADNLSQCSSVY
QCDRAGSSYSGDEGSSGNARRHFSQYATVSASPLVGLPEFSHLGWGHWFTLRDLEHATNRFSKE
NVIGEGGYGVVYRGRLINGTDVAIKKLLNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGI
HRMLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVVLGIAKALAYLHEAIEPKVVHRDIKSSN
ILIDEEFNGKLSDFGLAKMLGAGKSHITTRVMGTFGLLRSEDVDR*(+)
MDQRHMKPSIKKITTQILIPITIHSLKPKGGVLDDSSARRVSPVDIFTSQQPKSSHNSSCDMAL
PCTQHLSQAKIRKFAIEFFID*(-)
MIALHAGFHLSTSSLLNNPKVPITRVVIWLFPAPSILAKPKSESLPLNSSSISMLLDLISRCTT
FGSIASCK*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	18973788-18971422(+) 18971436-18971445(+) 18971573-18973782(-) 18971473-18973721(-)
Potential amino acid sequence	MKNSMANFLILAWLRCWVQGRAISQLELWELLGC(+) MSTGETLRAELSSRTPPFGLRLWIVIGISIWVVIFFILGFMCLWSIYRRKPKKSFDKIPVSQIP DVSKEIAVDEVREHAVVENFRVQESHAISVQEKHYEKDSGKMLAHLVRSKSSDADNLSQCSSVY QCDRAGSSYSGDEGSSGNARRHFSQYATVSASPLVGLPEFSHLGWGHWFTLRDLEHATNRFSKE NVIGEGGYGVVYRGRLINGTDVAIKKLLNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGI HRMLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVVLGIAKALAYLHEAIEPKVVHRDIKSSN ILIDEEFNGKLSDFGLAKMLGAGKSHITTRVMGTFGLLRSEDVDR(+) MDQRHMKPSIKKITTQILIPITIHSLKPKGGVLDDSSARRVSPVDIFTSQQPKSSHNSSCDMAL PCTQHLSQAKIRKFAIEFFID(-) MIALHAGFHLSTSSLLNNPKVPITRVVIWLFPAPSILAKPKSESLPLNSSSISMLLDLISRCTT FGSIASCK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0497600_circ_g.1

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