Detail information of BGIOSGA034929_circ_g.2


General Information
CircRNA Name BGIOSGA034929_circ_g.2
ID in PlantcircBase osi_circ_009309
Alias Chr11:4229705_4229927(ZS97RS2), Chr11:4158116_4158338(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 3904229-3904451  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, find_circ
Parent gene BGIOSGA034929
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA034929_circ_g.3 BGIOSGA034929_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA034929-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTATTATCCATCAGCATGAAAGAACCATAGGAGTAGAGCAAGACTTGAGTGCAAATATAACT
CAACATGGTCAGCAAATTCAAACGCTCCAGAACAAAggtaaaatcaaacaccagtcaactggaa
accaataataatgatcatcattcgcttgagaataggattcaagttttggaatcaacagaaaggc
agaacgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAAATCAAACACCAGTCAACTGGAAACCAATAATAATGATCATCATTCGCTTGAGAATAGG
ATTCAAGTTTTGGAATCAACAGAAAGGCAGAACGCTTCTAGATTGGTGAAAATGGAGGAGTCTA
TTATCCATCAGCATGAAAGAACCATAGGAGTAGAGCAAGACTTGAGTGCAAATATAACTCAACA
TGGTCAGCAAATTCAAACGCTCCAGAACAAA
Conservation Information
Conserved circRNAs osa_circ_008705
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021