Plant Circular RNA Database

Detail information of Os08g0318500_circ_g.21

			
						 General Information
					
						CircRNA Name
						Os08g0318500_circ_g.21
					
						ID in PlantcircBase
						osa_circ_036691
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 13759337-13760673  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0318500						
					
						Parent gene annotation
						
							Sec8 exocyst complex component specific domain containing protei
n. (Os08t0318500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0318500_circ_g.18 Os08g0318500_circ_g.19 Os08g0318500_circ_g.20 Os08g0318500_circ_g.22 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0318500-01:4

General Information
CircRNA Name	Os08g0318500_circ_g.21
ID in PlantcircBase	osa_circ_036691
Alias	NA
Organism	Oryza sativa
Position	chr8: 13759337-13760673 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0318500
Parent gene annotation	Sec8 exocyst complex component specific domain containing protei n. (Os08t0318500-01)
Parent gene strand	-
Alternative splicing	Os08g0318500_circ_g.18 Os08g0318500_circ_g.19 Os08g0318500_circ_g.20 Os08g0318500_circ_g.22
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0318500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACTTCCCGAGAAATACTTTTGGAATCCCTCCGACTACGCCCACCATCACTTTCATGCATGTCT
ATGCTACTATCATCATCTGGGCCATCAAATGAAGAActgcacaactgacaaagagaatgcgaca
gtaaaaccaccagtagcctgggaagattcagaatctggattccagcttgcatccccatttgcca
tgtgagga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 712
Transcript exons: 13759337-13759503,13759595-13759893,13760333-13760439,13
760535-13760673
CTGCACAACTGACAAAGAGAATGCGACAGTAAAACCACCAGTAGCCTGGGAAGATTCAGAATCT
GGATTCCAGCTTGCATCCCCATTTGCCATGTGAGGAGTGTTTGCATTATCAACTTCAGTTGATG
ATTTCTGTTCAAGAAGCTCTCCAACAGTAATATGGTTCTCAAGAATGTCTACCAGGCATTCAAA
TATTGCACTAAGAAGTTGACTAGCTGCACACTGAGCATCTCCAGTGGGTGCCATAGCTGGAGAG
ATGGGACTGACAACTAGTTGACTTGCCATTAGTGATGCACCATTTTTCGTCTTCTGTTTGAGCA
GTTGGTAACGAGCAGCACGTCCATTTGAGTGTGACACATCAGAATTTTCATTTGCAGCTTTGTT
TACATTGGACTTTGAAGTTTCTTCAGAGTAGGCTCTTATCTTTGAGGTGATAACATCATGGATT
GTAGGGCGAACTCTTTGGCATATCACAGCTCCTGCAGCCGCAACCTTTCCAAGCATGGATAAGC
ACTGCACCAATGTTCTCAAGTATTTCACACTGAGAGAAGCATCTGCCTTTGTCACTGATTCAAG
AAACTCATCTGGTGTAGCACACGAAAGGAAAATTGGCACTTCCCGAGAAATACTTTTGGAATCC
CTCCGACTACGCCCACCATCACTTTCATGCATGTCTATGCTACTATCATCATCTGGGCCATCAA
ATGAAGAA
						
					

						Genomic sequence
						
							CTGCACAACTGACAAAGAGAATGCGACAGTAAAACCACCAGTAGCCTGGGAAGATTCAGAATCT
GGATTCCAGCTTGCATCCCCATTTGCCATGTGAGGAGTGTTTGCATTATCAACTTCAGTTGATG
ATTTCTGTTCAAGAAGCTCTCCAACAGTAATATGGTTCTCTGCCAAGCAAAAGCACTTTTTCAT
TCTTGCATAGTCCACAAGATTTAGTTTTGTAAGTGTCACCCAAGTAACTGAGAACATAGCACCT
ACCAAGAATGTCTACCAGGCATTCAAATATTGCACTAAGAAGTTGACTAGCTGCACACTGAGCA
TCTCCAGTGGGTGCCATAGCTGGAGAGATGGGACTGACAACTAGTTGACTTGCCATTAGTGATG
CACCATTTTTCGTCTTCTGTTTGAGCAGTTGGTAACGAGCAGCACGTCCATTTGAGTGTGACAC
ATCAGAATTTTCATTTGCAGCTTTGTTTACATTGGACTTTGAAGTTTCTTCAGAGTAGGCTCTT
ATCTTTGAGGTGATAACATCATGGATTGTAGGGCGAACTCTTTGGCTGTTAAGGAAATACAGGC
ATAAACACCAAAAGGTAAAGTGAATATCAAAACAGCAGTAGTAAGATCCAGGATGACTGAACCA
CCAAGTGGAGTTCTAAGGCAATGTTTTCATACTAGAAGACAGGATATTTAATTTGTCTGTATTA
ATTGTTCAATGTGCTATTTTAATTATATCCCCCAAACATCTCTTGCCCTTTTGTAATACCTAAT
CTTGCCTGTGTGTTGCAATGGATGCCAAATAAGTATACTACAAGAGGATCTCAATTTTTTAGAA
ACATGGAATACTGATACAGCACTTTCAACCTTGCTACATTTTTGCTTAACTTAACTATTTGGAA
CAAAACCACATATCCAATATATTAGCACAAAAATCAAATCTTAATAAAGATAGAACATTTTTAG
TGCGCAAAAATAAAAAAGCAAAAAACAGAAGTATACCATATCACAGCTCCTGCAGCCGCAACCT
TTCCAAGCATGGATAAGCACTGCACCAATGTTCTCAAGTATTTCACACTGAGAGAAGCATCTGC
CTTTGTCACTGATTCCTAAAAGCAGAATTCAAAACAATAAATAAATAAATCGGGCAATTGACCA
AGGAAAGTGTTTGACCATGATGTAATAAGAAAAAAATAAATCATACAAGAAACTCATCTGGTGT
AGCACACGAAAGGAAAATTGGCACTTCCCGAGAAATACTTTTGGAATCCCTCCGACTACGCCCA
CCATCACTTTCATGCATGTCTATGCTACTATCATCATCTGGGCCATCAAATGAAGAA
						
					

			
		

Sequences
Splice junction sequence	CACTTCCCGAGAAATACTTTTGGAATCCCTCCGACTACGCCCACCATCACTTTCATGCATGTCT ATGCTACTATCATCATCTGGGCCATCAAATGAAGAActgcacaactgacaaagagaatgcgaca gtaaaaccaccagtagcctgggaagattcagaatctggattccagcttgcatccccatttgcca tgtgagga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 712 Transcript exons: 13759337-13759503,13759595-13759893,13760333-13760439,13 760535-13760673 CTGCACAACTGACAAAGAGAATGCGACAGTAAAACCACCAGTAGCCTGGGAAGATTCAGAATCT GGATTCCAGCTTGCATCCCCATTTGCCATGTGAGGAGTGTTTGCATTATCAACTTCAGTTGATG ATTTCTGTTCAAGAAGCTCTCCAACAGTAATATGGTTCTCAAGAATGTCTACCAGGCATTCAAA TATTGCACTAAGAAGTTGACTAGCTGCACACTGAGCATCTCCAGTGGGTGCCATAGCTGGAGAG ATGGGACTGACAACTAGTTGACTTGCCATTAGTGATGCACCATTTTTCGTCTTCTGTTTGAGCA GTTGGTAACGAGCAGCACGTCCATTTGAGTGTGACACATCAGAATTTTCATTTGCAGCTTTGTT TACATTGGACTTTGAAGTTTCTTCAGAGTAGGCTCTTATCTTTGAGGTGATAACATCATGGATT GTAGGGCGAACTCTTTGGCATATCACAGCTCCTGCAGCCGCAACCTTTCCAAGCATGGATAAGC ACTGCACCAATGTTCTCAAGTATTTCACACTGAGAGAAGCATCTGCCTTTGTCACTGATTCAAG AAACTCATCTGGTGTAGCACACGAAAGGAAAATTGGCACTTCCCGAGAAATACTTTTGGAATCC CTCCGACTACGCCCACCATCACTTTCATGCATGTCTATGCTACTATCATCATCTGGGCCATCAA ATGAAGAA
Genomic sequence	CTGCACAACTGACAAAGAGAATGCGACAGTAAAACCACCAGTAGCCTGGGAAGATTCAGAATCT GGATTCCAGCTTGCATCCCCATTTGCCATGTGAGGAGTGTTTGCATTATCAACTTCAGTTGATG ATTTCTGTTCAAGAAGCTCTCCAACAGTAATATGGTTCTCTGCCAAGCAAAAGCACTTTTTCAT TCTTGCATAGTCCACAAGATTTAGTTTTGTAAGTGTCACCCAAGTAACTGAGAACATAGCACCT ACCAAGAATGTCTACCAGGCATTCAAATATTGCACTAAGAAGTTGACTAGCTGCACACTGAGCA TCTCCAGTGGGTGCCATAGCTGGAGAGATGGGACTGACAACTAGTTGACTTGCCATTAGTGATG CACCATTTTTCGTCTTCTGTTTGAGCAGTTGGTAACGAGCAGCACGTCCATTTGAGTGTGACAC ATCAGAATTTTCATTTGCAGCTTTGTTTACATTGGACTTTGAAGTTTCTTCAGAGTAGGCTCTT ATCTTTGAGGTGATAACATCATGGATTGTAGGGCGAACTCTTTGGCTGTTAAGGAAATACAGGC ATAAACACCAAAAGGTAAAGTGAATATCAAAACAGCAGTAGTAAGATCCAGGATGACTGAACCA CCAAGTGGAGTTCTAAGGCAATGTTTTCATACTAGAAGACAGGATATTTAATTTGTCTGTATTA ATTGTTCAATGTGCTATTTTAATTATATCCCCCAAACATCTCTTGCCCTTTTGTAATACCTAAT CTTGCCTGTGTGTTGCAATGGATGCCAAATAAGTATACTACAAGAGGATCTCAATTTTTTAGAA ACATGGAATACTGATACAGCACTTTCAACCTTGCTACATTTTTGCTTAACTTAACTATTTGGAA CAAAACCACATATCCAATATATTAGCACAAAAATCAAATCTTAATAAAGATAGAACATTTTTAG TGCGCAAAAATAAAAAAGCAAAAAACAGAAGTATACCATATCACAGCTCCTGCAGCCGCAACCT TTCCAAGCATGGATAAGCACTGCACCAATGTTCTCAAGTATTTCACACTGAGAGAAGCATCTGC CTTTGTCACTGATTCCTAAAAGCAGAATTCAAAACAATAAATAAATAAATCGGGCAATTGACCA AGGAAAGTGTTTGACCATGATGTAATAAGAAAAAAATAAATCATACAAGAAACTCATCTGGTGT AGCACACGAAAGGAAAATTGGCACTTCCCGAGAAATACTTTTGGAATCCCTCCGACTACGCCCA CCATCACTTTCATGCATGTCTATGCTACTATCATCATCTGGGCCATCAAATGAAGAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017773 						
					
						PMCS
						0.156100511

Conservation Information
Conserved circRNAs	osi_circ_017773
PMCS	0.156100511

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13760370-13759345(+)
13760667-13759430(+)
13760635-13760664(-)
13759448-13760664(-)
						
						Potential amino acid sequence
						
							MDKHCTNVLKYFTLREASAFVTDSRNSSGVAHERKIGTSREILLESLRLRPPSLSCMSMLLSSS
GPSNEELHN*(+)
MKNCTTDKENATVKPPVAWEDSESGFQLASPFAM*(+)
MHESDGGRSRRDSKSISREVPIFLSCATPDEFLESVTKADASLSVKYLRTLVQCLSMLGKVAAA
GAVICQRVRPTIHDVITSKIRAYSEETSKSNVNKAANENSDVSHSNGRAARYQLLKQKTKNGAS
LMASQLVVSPISPAMAPTGDAQCAASQLLSAIFECLVDILENHITVGELLEQKSSTEVDNANTP
HMANGDASWNPDSESSQATGGFTVAFSLSVVQFFI*(-)
MQTLLTWQMGMQAGIQILNLPRLLVVLLSHSLCQLCSSSFDGPDDDSSIDMHESDGGRSRRDSK
SISREVPIFLSCATPDEFLESVTKADASLSVKYLRTLVQCLSMLGKVAAAGAVICQRVRPTIHD
VITSKIRAYSEETSKSNVNKAANENSDVSHSNGRAARYQLLKQKTKNGASLMASQLVVSPISPA
MAPTGDAQCAASQLLSAIFECLVDILENHITVGELLEQKSSTEVDNANTPHMANGDASWNPDSE
SSQATGGFTVAFSLSVVQFFI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13760370-13759345(+) 13760667-13759430(+) 13760635-13760664(-) 13759448-13760664(-)
Potential amino acid sequence	MDKHCTNVLKYFTLREASAFVTDSRNSSGVAHERKIGTSREILLESLRLRPPSLSCMSMLLSSS GPSNEELHN(+) MKNCTTDKENATVKPPVAWEDSESGFQLASPFAM(+) MHESDGGRSRRDSKSISREVPIFLSCATPDEFLESVTKADASLSVKYLRTLVQCLSMLGKVAAA GAVICQRVRPTIHDVITSKIRAYSEETSKSNVNKAANENSDVSHSNGRAARYQLLKQKTKNGAS LMASQLVVSPISPAMAPTGDAQCAASQLLSAIFECLVDILENHITVGELLEQKSSTEVDNANTP HMANGDASWNPDSESSQATGGFTVAFSLSVVQFFI(-) MQTLLTWQMGMQAGIQILNLPRLLVVLLSHSLCQLCSSSFDGPDDDSSIDMHESDGGRSRRDSK SISREVPIFLSCATPDEFLESVTKADASLSVKYLRTLVQCLSMLGKVAAAGAVICQRVRPTIHD VITSKIRAYSEETSKSNVNKAANENSDVSHSNGRAARYQLLKQKTKNGASLMASQLVVSPISPA MAPTGDAQCAASQLLSAIFECLVDILENHITVGELLEQKSSTEVDNANTPHMANGDASWNPDSE SSQATGGFTVAFSLSVVQFFI(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0318500_circ_g.21

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