Detail information of Zm00001d025551_circ_g.1


General Information
CircRNA Name Zm00001d025551_circ_g.1
ID in PlantcircBase zma_circ_006281
Alias tassel_test_circ_001662
Organism Zea mays
Position chr10: 122020795-122020921  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d025551
Parent gene annotation Polyadenylate-binding protein RBP47B
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues tassel
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d025551_T003:1
Zm00001d025551_T004:1
Zm00001d025551_T002:1
Zm00001d025551_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGTCATGTGATGCCAAACACTGACCGGCCATTTAAATTGAACTGGGCATCGTATAGCATGGg
aggggtatggatttgttgagttcttttctcatgcatcagcagagaaagctcttcagaatttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGGGTATGGATTTGTTGAGTTCTTTTCTCATGCATCAGCAGAGAAAGCTCTTCAGAATTTTA
CTGGTCATGTGATGCCAAACACTGACCGGCCATTTAAATTGAACTGGGCATCGTATAGCATGG
Conservation Information
Conserved circRNAs NA
PMCS 0.887153726
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018