Detail information of Zm00001d027273_circ_ig.1


General Information
CircRNA Name Zm00001d027273_circ_ig.1
ID in PlantcircBase zma_circ_006336
Alias Zm01circ00001, ZmciR5
Organism Zea mays
Position chr1: 1211023-1211495  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTACCTTGCCGAAGCGCTTGAGGTGCAGCCACCGTAAATCTTCTGAAAGCCACCCACACCAA
TGTCTTGCCTCTGGTAGATCTTCCTTGCAATGGACGcgttcatgaaccactcgtcgtcggagga
aatgtaggcccgcttgatgatcaacttcaggtcggtcatcacctaaaccacctccagcaaggtc
tcgtactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTCATGAACCACTCGTCGTCGGAGGAAATGTAGGCCCGCTTGATGATCAACTTCAGGTCGGT
CATCACCTAAACCACCTCCAGCAAGGTCTCGTACTTGTTGGCGCTGTCCACCTGCAGCCAGAAA
TTGAGCAACCTCACAATACCACGAAAAAATGGATTATTCCCATGTCGCTAAGTATGAGTCGAAT
GATAGAAAGCCAGAGGCGAGAAAAGTTTGCTAGTATAACCAAAGAGTAACATAGCACGATGGTC
CCATGTGGCAATCCGATGCAATCGCAGAAGCTCGTCTCTGCCGACTACCACAGTGCACGACCAT
CTGTTGTAGGCTTATATCGTCGAATCAGATGGGAAAGGGGGCGAATCAGGCACAATTACCTTGC
CGAAGCGCTTGAGGTGCAGCCACCGTAAATCTTCTGAAAGCCACCCACACCAATGTCTTGCCTC
TGGTAGATCTTCCTTGCAATGGACG
Conservation Information
Conserved circRNAs NA
PMCS 0.261049842
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020;Zhang et al., 2019