Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016452_circ_g.1 |
ID in PlantcircBase | zma_circ_002069 |
Alias | circ954 |
Organism | Zea mays |
Position | chr5: 162844468-162853028 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d016452 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d016452_circ_g.2 Zm00001d016452_circ_g.3 Zm00001d016452_circ_g.4 |
Support reads | 11 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d016452_T005:6 Zm00001d016452_T033:6 Zm00001d016452_T008:6 Zm00001d016452_T016:6 Zm00001d016452_T013:6 Zm00001d016452_T022:6 Zm00001d016452_T018:6 Zm00001d016452_T047:6 Zm00001d016452_T049:4 Zm00001d016452_T037:6 Zm00001d016452_T011:6 Zm00001d016452_T050:2 Zm00001d016452_T023:6 Zm00001d016452_T012:5 Zm00001d016452_T002:5 Zm00001d016452_T043:6 Zm00001d016452_T031:6 Zm00001d016452_T030:6 Zm00001d016452_T035:7 Zm00001d016452_T001:6 Zm00001d016452_T025:6 Zm00001d016452_T007:5 Zm00001d016452_T020:6 Zm00001d016452_T028:6 Zm00001d016452_T014:6 Zm00001d016452_T040:6 Zm00001d016452_T026:6 Zm00001d016452_T034:8 Zm00001d016452_T038:6 Zm00001d016452_T042:6 Zm00001d016452_T045:6 Zm00001d016452_T009:5 Zm00001d016452_T048:6 Zm00001d016452_T032:6 Zm00001d016452_T029:7 Zm00001d016452_T019:6 Zm00001d016452_T010:6 Zm00001d016452_T003:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.016628592 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |