Detail information of AT2G02570_circ_g.9


General Information
CircRNA Name AT2G02570_circ_g.9
ID in PlantcircBase ath_circ_012593
Alias NA
Organism Arabidpsis thaliana
Position chr2: 700345-700716  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G02570
Parent gene annotation Nucleic acid binding/RNA binding protein
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAGAAACCTACATTCAATTTCTCTTCACCAATTCGAAATTCTAATCCACATACAAAATTCT
GAAACAAAGAGAAGAAAGAAATCGTCTCGAACGAACagataacccagaagagaagcaagtgtat
gatcacattccatcaccctactaaaactaagccaaaagacctatcagagagactaaaaaggaac
ataaaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATAACCCAGAAGAGAAGCAAGTGTATGATCACATTCCATCACCCTACTAAAACTAAGCCAAA
AGACCTATCAGAGAGACTAAAAAGGAACATAAAAACGCAGACTTTGAAATAGAACTCGCAACCC
TAGTATAGTGATTAATCCGTTCACAAATCTGATTATTAATTCACAAAGGAAGAAGATACAATGA
AACTTAACAACAACTCGTCAAATCAACGAATCCCTAAAAAACTATTCCTACGAACCCTAACTCA
GGAACAATCACACAAAATTCAGAAACCTACATTCAATTTCTCTTCACCAATTCGAAATTCTAAT
CCACATACAAAATTCTGAAACAAAGAGAAGAAAGAAATCGTCTCGAACGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.125447849
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017