Plant Circular RNA Database

Detail information of Zm00001d020381_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d020381_circ_g.1
					
						ID in PlantcircBase
						zma_circ_005443
					
						Alias
						pollen_test_circ_000495
					
						Organism
						
							Zea mays						
					
						Position
						
							chr7: 110245507-110249253  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Zm00001d020381						
					
						Parent gene annotation
						
							Annexin D5
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Zm00001d020381_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						pollen
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d020381_T006:6
Zm00001d020381_T014:2
Zm00001d020381_T001:7
Zm00001d020381_T007:7
Zm00001d020381_T008:7
Zm00001d020381_T003:7
Zm00001d020381_T004:7
Zm00001d020381_T012:4
Zm00001d020381_T009:7
Zm00001d020381_T013:3
Zm00001d020381_T010:5
Zm00001d020381_T005:7
Zm00001d020381_T011:4
Zm00001d020381_T002:2

General Information
CircRNA Name	Zm00001d020381_circ_g.1
ID in PlantcircBase	zma_circ_005443
Alias	pollen_test_circ_000495
Organism	Zea mays
Position	chr7: 110245507-110249253 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d020381
Parent gene annotation	Annexin D5
Parent gene strand	+
Alternative splicing	Zm00001d020381_circ_g.2
Support reads	NA
Tissues	pollen
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d020381_T006:6 Zm00001d020381_T014:2 Zm00001d020381_T001:7 Zm00001d020381_T007:7 Zm00001d020381_T008:7 Zm00001d020381_T003:7 Zm00001d020381_T004:7 Zm00001d020381_T012:4 Zm00001d020381_T009:7 Zm00001d020381_T013:3 Zm00001d020381_T010:5 Zm00001d020381_T005:7 Zm00001d020381_T011:4 Zm00001d020381_T002:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAACTGATCTCATATTTACTTGTATTTTCCTTTCGTCAGGTTATGTTTCGACCATGGGACATG
ATATTCCATCCATCCACCCTAAATGCAGCGACCTACcccatttcgctaatctccctccacgagc
cgaccaaatcgaatcgaatcgcgcgcagcgcgcccgcgcagcgattgccggcgatggcgagcct
caccctgc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCCATTTCGCTAATCTCCCTCCACGAGCCGACCAAATCGAATCGAATCGCGCGCAGCGCGCCCG
CGCAGCGATTGCCGGCGATGGCGAGCCTCACCCTGCCGCCGGCGCCCCCCAACCCACGGCAGGA
CGCCATCGACCTCCAAAAGGCCTTCAAAGGTCCGCTACGCCACTAATTTCCCCTCGGCTTCTCG
CCCAAATTACGGCTGCCCCACAATTCGTCGGGGTCAGCCGCGCCGTTGTTGTTTGATTCTCGTT
TTCGGTCAGATACTGTGGCTGAATGGACAGGAGATTATTCTATGGGGCCGGAAACCGTCGTTGC
TATTTGGTTGCCTGGCGGTTACCTTGATTTTCTGCGCATGCGAGTTTGGGGGGTGCGTCGAGGA
GCTAGACGATGCTACAACAATTCCCTATTCCAGGGGGGGGGCTAGCTGGACTGGGTTCAGATTG
CAGATGGGAAGGTGGTCGAGGAGGGTTATTGTTATTAGAGGCTTATATAGGCCATTGGAAATTT
CCTGTGGTTGCTAGGTCAGTAATTGGGTAGCGATTGATCTGGATACAGTGATGGAAATTACGGT
GATTATGACATCTTTTGTTTTATCTGACTATAATTTGGGGTCAAGCATGTAGTGGAGTAATACA
AGGGAAACTCACCTGCAATTCTGGACGGTGTAGGTGCTATAGATTCCACATGTGTACCTGATAA
CTAAATTAGTGTACAGTGAACCGAGGGAAATGCATGGGTAACTATAAGTTTCACATACGGTGAC
TGAGGAAAATGTATAATAACTGTAAGGTACACACATATATATTAGAATTTATTTTTAATGAAAG
TATGGTGGTCTTTTGTATGCTCTAACATGTGTGATTAAAGAATTCTGTGGTTAGCTGATATGCA
AGTTGATGCATTTGTTAATTATTTTATTGTTTGGTTTATTTCTATTTTGTTACGCATTTCCTTT
CCATAAACATTCCAATTTGCTCACAATACCTTAAGAGTGCTGTGCACCAACTGCCATAAAAAGG
CCAAAAGACAGGTCAACTGCTTCTAGCCTTCCAGGAACTTATTAATAATCCCTCTGCTTTTTTT
ATTTAGTGTTTCTGACTTTTCATGGCTTAGATATGCGACTTTGACCATTACTTGTAACTTTATA
TCACTAAAATGTTGTAATTCTATATGTGTTTCTTGGGATGGTCTGTAACTATTAATTCAATGTG
TTTTTTTTCTTGTATTTTTATCACAAAACAATTTATGATCTGATATTTTTCATCAACAAAATTG
AAAATTGTTGTTCAGAGTGAGTTTGGTTTGATATGCTTGAATGATGACAGCTATTGTATGTAAG
TGAGCATAAATAGTACTACTGTTCTCGAATATTTGTGGCCCGCTAGTTCATTTTTGAACTAAAA
CGCGACAAATAAAAAAAGAACGGAGGGAGTGTAACTTAGACATGTAATTGAATTCCAGTAATTG
AGTGATCTGCATACTTCGATCCTTTTACTTAAAATATCAAAGTTTTTTATTTTCATTACTGACT
TGAAGGAGGTGGTCATTGAACATGCTGACTTTTTTATATTGTGCGTTGGTTGATGGTTGTCCAT
GTCCAGGGTTTGGCTGTGACAGTACAACAGTGATAAACATACTTACTCATCGCGATTCAGTGCA
GCGTGGACTCATTCAACAGGAATACAGGGCTATGTATCATGAGGAACTCTCCCATCGCATTTCA
TCTGAACTCAATGGAAACCACAAGGCATGAAAATTTCTCAAATCATTAATCTAGCTGTACCAAT
ATACTTTATCATCTGTACCATGTATCCACCGTTGAGAACTGATGATTTGAATGGATTAGCTAAA
AAAGTGAATATGTGTTGCTCCAATCATGATTTACGTTTAATTTATCAAAACCAATATGTTAAAA
TATGTTAACTTTGTTTCATGTGGCTCCAGAAAGCTATGTTGCTGTGGATTCTTGATCCTGCTGG
ACGTGATGCAACTGTTTTGAGAGAAGCTCTAAGTGTTGACACTATGGATCTGAGAGCAGCCACT
GATATTATATGTTCCAGGACGCCATCACAGTTGCAAATAATGAAACAGACTTATTATGCTAGAT
TTGGTACTTATCTTGAGCATGACATTGGTCACCACACATCTGGCGATCACCAGAAGGTCCTGAT
CCTTGGTACTTAGAGTATCTGCCTTACATTTGTTCTACTTCACCTCATACATGATGATACATGA
AAGACACTTAAAACTAGTCATTTTATCCATCTTTATGTATTACACTGACTAGCATTAGGAAGGT
GAATATTTGTCTGTAATTTCTTTGGAACAACTTTCATGTGTGGCTAAATGATTGCATAACCTGC
TATTGTGAGTCTATGTCTATGAGATATCCTCACATCTAATGTCTGTGTTGTATAAGACTGATGG
AATGCCCATTCTTCATTGACATATTGCAATTACTGATGTGAAGTTGGTTCAATTGCTTTTGTGT
AGTCATTTATGCTTTGTACATAATGCACAAAGAGATTCTGTAGCATGAACTTCATGTGATGTAT
GCCAATCAATACTTTTTATAAGTTTGTAGTTAATATCTGTTCAAATTTAGATTGCACATTTTTC
TGCCAGAAATAATTTACGATATAATGTATATTTCAGCTTTTACTTGCCTATGTGGGGATTCCAC
GCTACGAAGGTCCTGAGGTTGATCCTACCATTGTGACACATGATGCAAAGGATTTGTACAAAGC
TGGTGAGAAAAGGCTGGGTACGGATGAGAAGACCTTTATCCGCGTTTTCACTGAACGCAGTTGG
GCACACTTGGCATCTGTTTCGTCTGCCTACCATCATATGTATGACCGGAAATTAGAGAAGGTAA
CACTTCTGTTTGCACACTTCTGGGATAAGCATTTTTTTATTCTCTGGTTTATTTTTTCACAGTG
CCGTTTATATATGATAGGTTATCAAGAGCGAAACATCTGGAAACTTTGAATTCGCACTTTTAGC
TATCCTCAGATGCGCGGAAAACCCAGCAAAGTATTTTGCAAAGGTACTGCGCCCATGTTGTTTT
CAGTAAAGAAATATTGTAGATTTTGAAATCCTGTGCAGGCACCATAGGTGTATAAAATCACTGA
TTGATTTAGAGTCGAGTTATGTTTTGCTGATAGATTTAGCCATAGCCAACAGCTGTTCTTTCTT
ACGAAATTATAATTTAACATTTGGTGAAGCAAAGATCACTAGTTGATATGACACTGATATAAAG
TTTGCTGTACCATCTAGAGTTGATCTTTTTATTTCTTATTTCAATTATATGTAACTTGCCACCA
TTCCAAAGTGTTATTTTCTGCTAATGCTGCGAAATGAGCATGTTCAAGATTGCTCTTGTATCTT
CGGTGCCGAATACAGCTCTTACGAAAGGCCATGAAAGGTCTAGGCACTGATGACAAGACACTTA
TAAGGGTTGTGGTGACGAGGACTGAAATTGATATGCAATATATCAAGGCAGAGTACTTCAAGAA
GTATAAGAAGCCATTAGCTGAGGCTATCCACTCCGAAACATCAGGAAACTATCGGACATTCCTT
CTTTCACTTGTTGGTCCTGGACATTAGGTTTGTTCCCTGGAGATACAGTGATTAAAGCATTTTC
AAACTGATCTCATATTTACTTGTATTTTCCTTTCGTCAGGTTATGTTTCGACCATGGGACATGA
TATTCCATCCATCCACCCTAAATGCAGCGACCTAC
						
					

			
		

Sequences
Splice junction sequence	CAAACTGATCTCATATTTACTTGTATTTTCCTTTCGTCAGGTTATGTTTCGACCATGGGACATG ATATTCCATCCATCCACCCTAAATGCAGCGACCTACcccatttcgctaatctccctccacgagc cgaccaaatcgaatcgaatcgcgcgcagcgcgcccgcgcagcgattgccggcgatggcgagcct caccctgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCCATTTCGCTAATCTCCCTCCACGAGCCGACCAAATCGAATCGAATCGCGCGCAGCGCGCCCG CGCAGCGATTGCCGGCGATGGCGAGCCTCACCCTGCCGCCGGCGCCCCCCAACCCACGGCAGGA CGCCATCGACCTCCAAAAGGCCTTCAAAGGTCCGCTACGCCACTAATTTCCCCTCGGCTTCTCG CCCAAATTACGGCTGCCCCACAATTCGTCGGGGTCAGCCGCGCCGTTGTTGTTTGATTCTCGTT TTCGGTCAGATACTGTGGCTGAATGGACAGGAGATTATTCTATGGGGCCGGAAACCGTCGTTGC TATTTGGTTGCCTGGCGGTTACCTTGATTTTCTGCGCATGCGAGTTTGGGGGGTGCGTCGAGGA GCTAGACGATGCTACAACAATTCCCTATTCCAGGGGGGGGGCTAGCTGGACTGGGTTCAGATTG CAGATGGGAAGGTGGTCGAGGAGGGTTATTGTTATTAGAGGCTTATATAGGCCATTGGAAATTT CCTGTGGTTGCTAGGTCAGTAATTGGGTAGCGATTGATCTGGATACAGTGATGGAAATTACGGT GATTATGACATCTTTTGTTTTATCTGACTATAATTTGGGGTCAAGCATGTAGTGGAGTAATACA AGGGAAACTCACCTGCAATTCTGGACGGTGTAGGTGCTATAGATTCCACATGTGTACCTGATAA CTAAATTAGTGTACAGTGAACCGAGGGAAATGCATGGGTAACTATAAGTTTCACATACGGTGAC TGAGGAAAATGTATAATAACTGTAAGGTACACACATATATATTAGAATTTATTTTTAATGAAAG TATGGTGGTCTTTTGTATGCTCTAACATGTGTGATTAAAGAATTCTGTGGTTAGCTGATATGCA AGTTGATGCATTTGTTAATTATTTTATTGTTTGGTTTATTTCTATTTTGTTACGCATTTCCTTT CCATAAACATTCCAATTTGCTCACAATACCTTAAGAGTGCTGTGCACCAACTGCCATAAAAAGG CCAAAAGACAGGTCAACTGCTTCTAGCCTTCCAGGAACTTATTAATAATCCCTCTGCTTTTTTT ATTTAGTGTTTCTGACTTTTCATGGCTTAGATATGCGACTTTGACCATTACTTGTAACTTTATA TCACTAAAATGTTGTAATTCTATATGTGTTTCTTGGGATGGTCTGTAACTATTAATTCAATGTG TTTTTTTTCTTGTATTTTTATCACAAAACAATTTATGATCTGATATTTTTCATCAACAAAATTG AAAATTGTTGTTCAGAGTGAGTTTGGTTTGATATGCTTGAATGATGACAGCTATTGTATGTAAG TGAGCATAAATAGTACTACTGTTCTCGAATATTTGTGGCCCGCTAGTTCATTTTTGAACTAAAA CGCGACAAATAAAAAAAGAACGGAGGGAGTGTAACTTAGACATGTAATTGAATTCCAGTAATTG AGTGATCTGCATACTTCGATCCTTTTACTTAAAATATCAAAGTTTTTTATTTTCATTACTGACT TGAAGGAGGTGGTCATTGAACATGCTGACTTTTTTATATTGTGCGTTGGTTGATGGTTGTCCAT GTCCAGGGTTTGGCTGTGACAGTACAACAGTGATAAACATACTTACTCATCGCGATTCAGTGCA GCGTGGACTCATTCAACAGGAATACAGGGCTATGTATCATGAGGAACTCTCCCATCGCATTTCA TCTGAACTCAATGGAAACCACAAGGCATGAAAATTTCTCAAATCATTAATCTAGCTGTACCAAT ATACTTTATCATCTGTACCATGTATCCACCGTTGAGAACTGATGATTTGAATGGATTAGCTAAA AAAGTGAATATGTGTTGCTCCAATCATGATTTACGTTTAATTTATCAAAACCAATATGTTAAAA TATGTTAACTTTGTTTCATGTGGCTCCAGAAAGCTATGTTGCTGTGGATTCTTGATCCTGCTGG ACGTGATGCAACTGTTTTGAGAGAAGCTCTAAGTGTTGACACTATGGATCTGAGAGCAGCCACT GATATTATATGTTCCAGGACGCCATCACAGTTGCAAATAATGAAACAGACTTATTATGCTAGAT TTGGTACTTATCTTGAGCATGACATTGGTCACCACACATCTGGCGATCACCAGAAGGTCCTGAT CCTTGGTACTTAGAGTATCTGCCTTACATTTGTTCTACTTCACCTCATACATGATGATACATGA AAGACACTTAAAACTAGTCATTTTATCCATCTTTATGTATTACACTGACTAGCATTAGGAAGGT GAATATTTGTCTGTAATTTCTTTGGAACAACTTTCATGTGTGGCTAAATGATTGCATAACCTGC TATTGTGAGTCTATGTCTATGAGATATCCTCACATCTAATGTCTGTGTTGTATAAGACTGATGG AATGCCCATTCTTCATTGACATATTGCAATTACTGATGTGAAGTTGGTTCAATTGCTTTTGTGT AGTCATTTATGCTTTGTACATAATGCACAAAGAGATTCTGTAGCATGAACTTCATGTGATGTAT GCCAATCAATACTTTTTATAAGTTTGTAGTTAATATCTGTTCAAATTTAGATTGCACATTTTTC TGCCAGAAATAATTTACGATATAATGTATATTTCAGCTTTTACTTGCCTATGTGGGGATTCCAC GCTACGAAGGTCCTGAGGTTGATCCTACCATTGTGACACATGATGCAAAGGATTTGTACAAAGC TGGTGAGAAAAGGCTGGGTACGGATGAGAAGACCTTTATCCGCGTTTTCACTGAACGCAGTTGG GCACACTTGGCATCTGTTTCGTCTGCCTACCATCATATGTATGACCGGAAATTAGAGAAGGTAA CACTTCTGTTTGCACACTTCTGGGATAAGCATTTTTTTATTCTCTGGTTTATTTTTTCACAGTG CCGTTTATATATGATAGGTTATCAAGAGCGAAACATCTGGAAACTTTGAATTCGCACTTTTAGC TATCCTCAGATGCGCGGAAAACCCAGCAAAGTATTTTGCAAAGGTACTGCGCCCATGTTGTTTT CAGTAAAGAAATATTGTAGATTTTGAAATCCTGTGCAGGCACCATAGGTGTATAAAATCACTGA TTGATTTAGAGTCGAGTTATGTTTTGCTGATAGATTTAGCCATAGCCAACAGCTGTTCTTTCTT ACGAAATTATAATTTAACATTTGGTGAAGCAAAGATCACTAGTTGATATGACACTGATATAAAG TTTGCTGTACCATCTAGAGTTGATCTTTTTATTTCTTATTTCAATTATATGTAACTTGCCACCA TTCCAAAGTGTTATTTTCTGCTAATGCTGCGAAATGAGCATGTTCAAGATTGCTCTTGTATCTT CGGTGCCGAATACAGCTCTTACGAAAGGCCATGAAAGGTCTAGGCACTGATGACAAGACACTTA TAAGGGTTGTGGTGACGAGGACTGAAATTGATATGCAATATATCAAGGCAGAGTACTTCAAGAA GTATAAGAAGCCATTAGCTGAGGCTATCCACTCCGAAACATCAGGAAACTATCGGACATTCCTT CTTTCACTTGTTGGTCCTGGACATTAGGTTTGTTCCCTGGAGATACAGTGATTAAAGCATTTTC AAACTGATCTCATATTTACTTGTATTTTCCTTTCGTCAGGTTATGTTTCGACCATGGGACATGA TATTCCATCCATCCACCCTAAATGCAGCGACCTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.010342567

Conservation Information
Conserved circRNAs	NA
PMCS	0.010342567

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Tang et al., 2018

circRNA

Detail information of Zm00001d020381_circ_g.1

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