Detail information of Solyc11g010560.1_circ_g.6


General Information
CircRNA Name Solyc11g010560.1_circ_g.6
ID in PlantcircBase sly_circ_003272
Alias SL3.0ch11:3620027|3624651
Organism Solanum lycopersicum
Position chr11: 3619867-3624491  JBrowse»
Reference genome SL2.50.38
Type   ie-circRNA
Identification method CIRI; find_circ
Parent gene Solyc11g010560.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc11g010560.1_circ_g.2 Solyc11g010560.1_circ_g.3 Solyc11g010560.1_circ_g.4 Solyc11g010560.1_circ_g.5 Solyc11g010560.1_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered Solyc11g010560.1.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAATTAAATTTGGATGTCGACGTTGCATCGGAGTTGGATAGATCAAAGAGCTCCTCAAAACA
CCTAGCATATAAACCACGATCATGGTTGGATCCTTCcaatatctctccatttcttgattgtatc
tctattcccaaggcttagtgtggcatttctagctctagcagaaaaattgagggaagataacgtc
tcagacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATATCTCTCCATTTCTTGATTGTATCTCTATTCCCAAGGCTTAGTGTGGCATTTCTAGCTCT
AGCAGAAAAATTGAGGGAAGATAACGTCTCAGACAAATTTGAAGCATTCGGACAGACATTAACA
ATCAGAAGCGTCTTTGCACTTTCACCTGCAAAAAGAAGAGGAAAAAAAATATTAGAGGTACCTA
GCCAGCAAATAGACTTTACAAGGGACAACAGAATAACAGAAATTAGAAACATGTAAGAGGTGTT
GTAGCAACCTATTACACAAGATACTGTAAGGCAAAAGATAACAACCCTTTCCCTCCAGATGCAA
TCAAAAACATAAATGTTAAGAGATTTATTTAGTTTTGACTTTCATTATCAACTAAGCTGCTCAA
TATGCAGCTTCAAATTGTAAGCATCACCAGTGTTGAATTTGACCATCTCCTTTAAAAGCTTAAA
TTGTTAGAGATCGCACATTGTTATTTACTTAGTTATATCTTCAATCAACCCCTCACATGCAGGC
TTGATTTTTTTTATTAGCCCAGCGCATGAAATATCTTTTTGATAAAGAGTAACAGTGAGAATTG
AAGCAGGATCTCACCTGTTCTGACACCATGTTGAATGGTGTGACCATCCAATACAAAAGCTTAA
GTTGTTAGAAAGAACACTTCTATTAACCTAATTATATCTTCACCAACTTGCACATTAAGTGAGT
TCCAAATTTTGGCCTACCCAAGTCCAACTCTAAGAGAAACAATGTAGGGTTAAGTCAATGAGCA
GAATCCAGATAGTGCATCCTTCAGAAAGCCTCCCCTTTTATTTGGACAAGCCATGTACGTATCC
AGCCAATAGATTTTATGATTTTATGATAAAGTATAAGGTGGATCAATCCAAATATACATACATC
TGTTATTATACTCTATACATCTACTTAGCAGTTAGGTGACAAAATTATTATGCCTCGGAAAACC
AGAGGCAACGGTCTTGTTCTTTTGTGATGATGTATCATGATGGCATCAACAAGAAGATGCAGAT
AGTACTAAAGAGAGATTGTTAGCTCTATTACAGTGAGGCAACAGTCTCATAGTTCCCAGTATTT
GCAGTCTCTATTACAGTGAGGCAACAGTCTCATAGTTCCCAGTATTTGCAGTCTCTATTACAGT
GAGGCAACAGTCTCATACTTTTCCCAGTATTTGCAGTCCATCTTTCTTCCCTTGAAATATAAAT
GATAAGATACATACTTAAATACTTCTGACAGTGTCTCGCGTTGAAAGATATGAAAAATATGCAT
CATATGAAGTATGTTAATAGCTCCTAGCTATAAGACAGTTTTCCAATGTATTCCCCCCCCCCCC
CATATACAAACTCTTGTTTCATGGCTTTAATTTGAGCTGACAAGGACACCATCCTCAAACTTTT
TTTTTAATGTTTTCTTTAGCTGAAGATAGTTGCATTAATCATAAGAATATGAAAGTTGGATTTC
TAGAATTATTTCCAAACCCCTGTATGATACATCCAGAAATCTAAAGCTACAAGTAATTACAGTA
AGAAATTTAGTTGCAGTAATAGAGAAGAAGAGTACAAAAAAGATGAGTAAACGTCAACATAAAA
TCAAACACATTGAGTAGAGCTCTTCAATCTATCTGAAGATAAGTTAACTGAATATCACAAAAAA
AGCCCTTCACCATAGAAGAGAAAGATGACCTCGTCCTCTAGTGTGACAAGCTCTAGTCATGAGC
ATATCTAAGAGAAAATAGAAATACCTAATGAAACAACTTATATACCAGGGCATATAGCTTGAGA
CCTACTTTAACTGAAAGAAACAGTGGTCTACAAGTAATAGCTAGAAGAAGCTTGCAAATGACCC
AGGACAACTTTTAAATAACAAGGTCAACAAGCAACTCCTCTGTTTCTATTTCAATTATGTGTCA
TACTTTCCTTTTTAGTCTATTTCAAAATGAATATCACTTTCTAACTTGAGTAACTCTTTTAACT
CAAACATCCCACATGGCAATGTTTAAAACCACAAGATTCAAAAATCTTCATTCTTTTCCTAAAA
CTCCGTGCCTAGTCAAGCAGAAACAACTGCACATAAGCATGAGTCTGTGTATGGGTTTGTATAT
ATGTATTACATTACTATTAACAATATAACGAAATTGAATAATATGAAACAGTATATTGAAGAAT
ATATTGACCAGTATTATAATCAATTGATTACCTAGTGAGTCTGCAAGTATTTTGGTGAGAACTG
AATTTCCATATGGAACAATGTCTTTTTTTGATGTCAAGGAATTCAAAACATCTCCCAATCTGCA
TGTCAATATCAAAGATGAGTATATATACAGAAAAATTGCAGTAAAACACAATATGACACTTTTT
TTTCTATCATTTATAGTAAAAATATGCCACCTGGCCTAAGTCAACCCCAAAAGCTAGCTCATGA
GGAGAAGGATTGCCCAAGTCCATATAAGGAGACCACCAGTCCATTCCCCAACCAATGTGGGAGT
TTTACTCACTCTAGCACCCACCCACCCCCTTCACGCCGAGGCCCAATTGGAGCGTGGACTGGGA
ACCCAAACGGGGATGGACCTGGCCCTGATACCATATATGGCACCTGGATGGCTGGACCTAACTC
AACCCCAAAAGCTAGCTAATGAGGGTAGACTTGCCCAAGTCCATATAAGCAAACCACAGTTCAT
TCCCCAACAAATGTAGGACTTTTACCTACTCTAACAATTATTAATTTTTCATGAGGGTGTACGC
AATTAATATTTTAAAGAATCGTCATAGACTAATTTAAGAAATTGATTTTCCTTGGTCAACTATG
TCTTAAAAGCTCTAATGTAATTAGTCCTCAAAGGAGCTATTGTCACACACTTGATTGTGGGACC
GACTATCCTCTTTAAGCTTACATGTCTATAAGCATAGTCCTTTAGAACTCTCCCAATGATCTTG
CATGTATGGAAATTGAGAAATAAGACGTAAGATAAGCTTTAATAAGCCAATATTTGATTTCTAA
TTTAAAAACCATCACATGAATGTCATCAGCCAAAAGAAGGCACATAGTGTTCCAATCCAGAAAC
AGAAATATACTGAGAACAAAGAGATGGTCTCATGGGGCAAAAAATGCGAAGTGATCCACCAAAT
TCCATTTCCGATCCAACAAATAAATTATGAACTTCATACTATTATGTCCTAGACCTGGGAAGCG
AACATGCACCGGGTTGAGGTTAAAGTATTATTGATAACAAAAGGTTAACATGAAACCACTTACG
CAGAAAGAGATTTCATGACATGAAGCAACTCTGTTGCATGCTCCCCACTATCCTCTTCAATACT
GCTTTCACTTCCAGCCAAATCAACAAGAGAAAGCTTGCTGTATGAGGTCTCTCCAGTGATTGAG
TTGGTATAATGTATATGTACTGTGACGATCCTAAAAGATGCAAGACCAAAGAAACATACAATTA
CTACTTAGAAAATTGGCAAAATCACCTATATTTTTCTCCAGACAATTCAGGGAAAAAGAGAATT
CATCATAGTGACTAACAGAGAGTCTGCATTTACCTTGCAAGAAGCACAGATACAGTCATACAGA
GACATAATAGAGACGGGGCTGTGCCTACATGCTAATCAGGATACTATTTTCTTTCTTTCCTTTC
CGAACTTTAAATTAGAAAATCAGAGTTTCAAGAATAGAAAGTTATGCCATGAATATGAAGGGGT
GTACAACTGATGCAATTTCAAATACCTAAATCAAATAAAATATATACACAGCAATGAGTTCAAC
ACAGAGGAACAGCAATTTTAGACAAATCAGAATCTGGACTGATATTGTGACAGGAACGAACAAA
TGATTCTTTATGTTGAGTATGTTCTTTTTTACCATTTTGAATATGAACATGTTCAACGTGAACT
AAATTGTTTTTCTTTTTGTGACAGAAAAGGAAAACAATTGTGTTTTTCTGTTGAACACATTCAC
ATTCAAAATGGTTCTTTTCTGAAAAATAACACAGTTGTTTCAAGAACTGTCAAACAATTTATGA
CAGAATATCACAAGTTCGCTCAGATGACTTCAGATTAACTCATGGGCAGACCATAAAGAAATCA
AGAAAGGTGACATTCTAAAACATAGATGAGAAAAAGGATAGAATCAACAGTAACAGACAAATAC
CAACTGGAAAGAGTTGTAGACCATACAGATGAGAAACTCTAAACTTTGACACATCACTTCCTCG
ATTCTGAAAAGCAAGTTTGAGAACTTGGCCAAAATCCATTGGATTTTCAACCCTTTCCTGCAGC
AGTTCTACAAAGCAATCCAATGACCCTATGCGAGCCTTCGGCAGATCAGTTCCAGAATGTATGA
GCAGATCTCGTATCTGCAATAATTGGAAAAGCCCTAACATCAAAAAATTTGGATATGGATTCCT
TATAGAACCTGCATACATAATTATGAAGATGAGAAAGCAATAAAACCTAAAAGATAAACATGAC
ATTAATATAAAACCTGTTCATTATGAAGTTCAGAAATGGAAACTGAGAAATTAAATTTGGATGT
CGACGTTGCATCGGAGTTGGATAGATCAAAGAGCTCCTCAAAACACCTAGCATATAAACCACGA
TCATGGTTGGATCCTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.127638542
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress
Other Information
References Yang et al., 2020