Detail information of AT2G02960_circ_g.5


General Information
CircRNA Name AT2G02960_circ_g.5
ID in PlantcircBase ath_circ_012626
Alias NA
Organism Arabidpsis thaliana
Position chr2: 864097-864247  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene AT2G02960
Parent gene annotation RING/FYVE/PHD zinc finger superfamily protein
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered AT2G02960.5:1
AT2G02960.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGGCGATCAAATCGGAGATAGGAATCAGAAATTGAAACTCAGATTTAAGATACAGAATCGAAG
AAAATCATCACtcagaaccatatgagatctaatctaatcgaattgaatcgatctgacatattcg
aaaccacataaccaataatcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCAGAACCATATGAGATCTAATCTAATCGAATTGAATCGATCTGACATATTCGAAACCACATAA
CCAATAATCTTTCCGGCGATCAAATCGGAGATAGGAATCAGAAATTGAAACTCAGATTTAAGAT
ACAGAATCGAAGAAAATCATCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.231215056
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017