Detail information of BGIOSGA028097_circ_g.1


General Information
CircRNA Name BGIOSGA028097_circ_g.1
ID in PlantcircBase osi_circ_007572
Alias 8:5067345|5071893
Organism Oryza sativa ssp. indica
Position chr8: 5067345-5071893  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA028097
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA028097-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCGATGGTTCTATAGAAATGGCAAAGCAACTTCCTAAAGAAATGATAATAAATTTGCTTGCA
AAGCTGGAAGTTGGAGAGTTTTGTTCTGTATGCAGTgttaagtcagcatagctaataactccgt
ctactgttgtgacctctgtggtttgctttgtgtgtttggcttcccaatcatctgcataaaccag
gaagtggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAAGTCAGCATAGCTAATAACTCCGTCTACTGTTGTGACCTCTGTGGTTTGCTTTGTGTGTT
TGGCTTCCCAATCATCTGCATAAACCAGGAAGTGGGTTTGCTTTGGAAATATTTGGGGTCAAAC
TAGTAGTTGGCACATTGTGATCTGATCATGTTTATGCACAGTTTGTACTGCTAAGCACAATTGG
AGTTCTGACTATACAGATGCTGTGCGCATGCTTGCTGGCAATATGAACAACGATAACTATATTG
ACTTGAGTTCAGACAGTGATATAGATTTTGACTTCGACTCAGATGATTCAGTTGGTGGTTTGGA
CCAGGAGCTAGCTTCATCTTCTTCTAGGCCTACTGAAAATATAAATGGTCAATATAGAACTCTG
CCACCTTCTTTTACAAATGGTAGACATGTTGATAACGCTCGTCATGCGTTAGGTTCAGGTGACA
GAGCTTATCCGCATTCAAGTTCTTATAGGGGGTCACCAAATGATTCTGCAAGGGCAGCTCCTGC
TTCCAACAGAACTGATATTGTAGTCAAGAAGCACAATGGTTTTGCATCGGATGAAAATGATAAT
GGCAAGAGGATTCTTCCCTCATCCTTTTCAAATGGCCGCACAACAAATGCTATGCATCCAGTGG
TTGCAAGTGAGACACGCAAATTCCCACCATCTTTTACCAATGGAAATTCACAAAGATTGGCTGA
AAATAGGATGGGAAAAAATGTTGCCAATGGAATTGGGGAGCCTTCATCGTCAAGGTTTCCGAGC
CGAAGTTCTTTTGGTACTGACAACAAGAAGGTCATCACAGACAGTGACAATGGTTTGTATACCT
AGTCTCAAATGATTGTAATTCATTCTTACAGTTGCTTGAAATCTGTCCAGGTTTTCTCTGAAAA
TCTAATGTTTCCCCTTTTTGTGTTTGCCAGAGGATGTCTATGTATATGGAAGCTCCAGTTCACA
TAGGGTTCTTCCTCCATCTTTTGGTCGCAATAGTTCTGCTAATCACAGCGAATTTGCTAATGGC
ATTGATATGCAAGGTCGTCTGAACCTGGAAAATAGGATTATAGATTCTGACGAGAGAGCGGTGT
ACCAGGAAGCACTACAGGCATGTGTTCCTTTGTTCCTAGTTATTGAGGCAATTTTGTATGATTG
AGTTGTTTTTCTTCTACGTTTTCTGAATCAAATTGGAGAGTTGATTTGATAGATAATATAAACA
GTTGGCACCATAATGTTTTTTTCCTAGTTCATCAATAATCAAAAGGATACTCTTGTGACGTGAA
GAGAACCACAGATAGCTAGTTTGGTGTTAAGTTGTTTAAATTTGCAAATTTGTTTAGATTTGCT
CATTATCAATCTCCTGGGTTCCTCAGTTTGCTCCTCAAATTATTTGGTTTTCTGACCTTTGAAC
ATACTATAGCTGCCCTCAATTTTTTTGACCTGTTTTGTCCTTGAAAAAATCATACTATTTATCT
CCATTCTTCAAGTAGAAAGATAGAAGTTCTTTGAAGATGATTATACATACTTCTAATTTTACTT
CAAACCTGTTTCATATTTTGTTTTGATTTTTTTTTGTTGAATTATATTGCAATCATGAAAGTTG
TATTTTTGTTTTTTGAATGAGGCATATAAATTTCTCATTTGTATGTTTATCTTGTCCATGACAA
GTTTTTATCCAGTCTAGGATACATTTTCCAGGTAGAAGTTATGTACTTTAGTGATCGAGGTATA
TGTTGGTCTTTATTTTGAGTCTGCTTTGTGATATTTCTTTTTATACTATGTTATACAGAATATT
ATCCAGGATAAAAGGGAAGATGATCTGCCTGAGGGTGTTCTGTCAGTACCTCTGCTTAGGCACC
AGGTAAATATTTCTCACATAATATTAATTATTTATTGGCTTACTTTATGATTGATAGTGTATTC
CATGTTCATTACATACCTTTTCTTTTTGAAAGAAAATGGCATTGGCTTGGATGGTTTCGAAGGA
GAATAGCTCTCATTGTGCAGGTGGAATTCTTGCAGATGATCAGGTTACTTCTGATTTCACAACT
TCTTGACAAAGATCAATTTCTTATTGTGTTACCATCCTTAAAGTCGAGCAGTTTTCTTTTAACA
GGGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATCCAGCAGTCTAAG
TTTATGTCTGTTGATTCAGATCGTTTAAAAGCTGAAGCGCTAAACCTTGATGATGACGATGAGG
CAGCGCCTGTTGCGGATAATAAGGGGGAGCAGACTAAGAATGATGAACCCAGGAAGGATCTAGG
AGCTGGTTCGTCATCAACAGCAGCTGGTACTGGTGACGTTGAAACATGTGCTAGCCTAATGAAT
ACTGCTCCAGATAAGACGGTTGAAAGAAATGTTGAACGTAAGAAGAAGAGTAAGGCAAGCACAT
CATCTACTATGCAATCCATGACAAGGCCTGCTGCAGGTACTCTAGTGGTGTGCCCAGCTAGTGT
TCTTAAGCAATGGGCGAACGAATTGACTGACAAGGTTGGTGAAAGTGCTAAATTGTCTGTTTTG
GTCTATCATGGTGGCTCAAGGACCAAAGATCCAAATGAGTTGGCAAAATATGATGTTGTTATCA
CTACATACACAATTGTGGCCAATGAAGTGCCTAAACAGAACGCCGATGATGACACTGATCAGAA
GAATGGTGAAGAATCTTCTGCTGGTAATAAGAGAAAACAACCACCCAAAGCACAGAGCAAGTCG
AAGAAAAAGAAAAAGAAACTTAAGGATTCAGACATTTACCTTGCCAGTGGCCCAGTTGCAAGAG
TGCGATGGTTTAGGGTTGTCCTTGATGAAGCTCAGACAATAAAGAACTTTCGAACTCAAGTGGC
TAAAGCCTGTTGTGGATTACGTGCAAAAAGAAGATGGTGCTTATCAGGAACACCTATACAAAAT
GCAATTGATGAGCTCTACAGCTATTTCCGTTTCTTGAAATACGATCCATATTCTACTTATAATT
CATTTTGTACAATGATAAAGCACCCGATTGCTAGAAATGCAGTTCATGGGTATAAGAAACTTCA
GACTGTGTTGAGGATAGTTCTCCTGCGCCGCACAAAAGGTGATAAAAACTTTTTTTATTCCATA
TGTTTTCTGCTGTTCCTTTTTTGCCTATATACTAGCTTAGGATATTTCATTGTAAGGAAGCAAT
TTCAACCACAACACATAGCATTCTTTGTTGCTACAGATTACAGAAACACGCTTAACACTCTGCA
TGTGGTTAAACATCTACTAGGGTCTGTATTTGCTATTGTGGTGGCTTTGTATTAAATTGATATA
TGCCATACAAACATTAGGTAGACAGGTTCGATCAATTTACCTTAATTGATGAGCAGATAGTGGA
AAGTTATGGTATTTCCTTTTTTTTCGTCAATATAAAGGACACTGCATTACAATTGCTTGCCAGT
TGCCATTTTACTACAAGTCCTCACTCCTCAGCTACTTGTTTCTACTCAGTATGCTATACCTCCT
TTCTCTTTTTCAAAGAAATTTGATATGGTTACATTATTGTTGCAAGATTTTTAATAGCATATTA
ATGCTAGTATGTTACTCTAGTTTTTCCTTTGATTAAATTATCTGTCGTTGATCACATGTTACCT
TGTTTTATGTAGAAACTCTGATTGATGGTGAGCCAATCATAAAGCTACCTCCAAAGACAATTAA
TCTGGATAAAGTAGATTTTACAAAAGAGGAGCGAGCTTTCTATTTGACGCTGGAAGAACGCTCG
CGGCAACAGTTCAAGGTTGGTTAAATTTTAAAGTCAAACTTTTCTGTGGACGGCCTCCGTATAG
TGTAGATTTGTGTTGCATCTGGTATTCCGAATTCTAGTCATGAAATGCCATTTTGGTCATGCAT
CGACTAAACTTTCAAAACTTTGAAAATTTATATTTGGATTGTATACATGATAGACACCCATGGA
GATTTGTCATGTGAAGGCACTTCTCATAATATCATAATTTTATTGAGGTTTACAAATATTATAA
AAGTTAGTGGTCAAATTTGCATTTTTGAACACCACGTAGATGTCCAAAATGACATTGATGTGAC
CAGGAGAAGTGATGTTAAATCTTCAACATTACTGAATTTCCTTTTGTCCTGGAGGCTGGAGCAA
GTATGTGTAGAATATTGTTGTTATGATCCAACAAAGTTTCCTCATGCTTCCATTGAACCATTGT
CTCATATCAAATGTTATAAAGTGGATGTTAATTTGTGTTCCCTTCTGATTACTGGAGATTTCGC
AAGTGTAGTTTCTGAATGCTGATATATTGTGATCCATTTCAGGCATACGCTGCTGCTGGTACAC
TCAAACAGAACTATGCCAACATTCTTCTAATGCTGTTGCGCCTTAGGCAGGCCTGCGATCATCC
TCTTCTTGTGAAGGGGCATCAGTCAGAGTATAAAGGCGATGGTTCTATAGAAATGGCAAAGCAA
CTTCCTAAAGAAATGATAATAAATTTGCTTGCAAAGCTGGAAGTTGGAGAGTTTTGTTCTGTAT
GCAGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021