Detail information of 4_circ_ag.3


General Information
CircRNA Name 4_circ_ag.3
ID in PlantcircBase ath_circ_029707
Alias NA
Organism Arabidpsis thaliana
Position chr4: 2442403-2446608  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 209
Tissues root, aerial, inflorescences, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGATGCAAGACTCCTCTTTATAAATCAACCACGAAGTTCGATTCCGGATGTGGCTGGCCAGCT
TTCTTTGAAGGACTCCCTGGTGCCATAAACCGAACCcctgatccagatgggagaagaactgaga
tcacttgtgccgtatgtgatggacatttaggccatgttcataaaggtgaaggttatagtactcc
aaccgatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 198
Transcript exons: 2442403-2442442,2446451-2446608
CCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCCGGAAAGCCAGGAACTGGAGAATATG
ACAAGTTTTTCGAGGAAGGAATCTTCGATTGCGTAGGATGCAAGACTCCTCTTTATAAATCAAC
CACGAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGACTCCCTGGTGCCATAAAC
CGAACC

Transcript length: 363
Transcript exons: 2442403-2442607,2446451-2446608
CCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCCGTATGTGATGGACATTTAGGCCATG
TTCATAAAGGTGAAGGTTATAGTACTCCAACCGATGAACGCCTTTGTGTTAACAGCGTTTCGAT
CAATTTTAACCCGGCCAAACCTTCCTCTATAACCTGAGGACTAGTTGATCGTACATTACTTTCA
AATCAGATTGTGGGAAAGCCAGGAACTGGAGAATATGACAAGTTTTTCGAGGAAGGAATCTTCG
ATTGCGTAGGATGCAAGACTCCTCTTTATAAATCAACCACGAAGTTCGATTCCGGATGTGGCTG
GCCAGCTTTCTTTGAAGGACTCCCTGGTGCCATAAACCGAACC

Transcript length: 389
Transcript exons: 2442403-2442633,2446451-2446608
CCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCCGTATGTGATGGACATTTAGGCCATG
TTCATAAAGGTGAAGGTTATAGTACTCCAACCGATGAACGCCTTTGTGTTAACAGCGTTTCGAT
CAATTTTAACCCGGCCAAACCTTCCTCTATAACCTGAGGACTAGTTGATCGTACATTACTTTCA
AATCAGATTGTGGTGTTCAATTGTAGAATCATCATCACGGAAAGCCAGGAACTGGAGAATATGA
CAAGTTTTTCGAGGAAGGAATCTTCGATTGCGTAGGATGCAAGACTCCTCTTTATAAATCAACC
ACGAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGACTCCCTGGTGCCATAAACC
GAACC

Transcript length: 394
Transcript exons: 2442403-2442639,2446452-2446608
CCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCCGTATGTGATGGACATTTAGGCCATG
TTCATAAAGGTGAAGGTTATAGTACTCCAACCGATGAACGCCTTTGTGTTAACAGCGTTTCGAT
CAATTTTAACCCGGCCAAACCTTCCTCTATAACCTGAGGACTAGTTGATCGTACATTACTTTCA
AATCAGATTGTGGTGTTCAATTGTAGAATCATCATCACGTTACAAAAAGCCAGGAACTGGAGAA
TATGACAAGTTTTTCGAGGAAGGAATCTTCGATTGCGTAGGATGCAAGACTCCTCTTTATAAAT
CAACCACGAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGACTCCCTGGTGCCAT
AAACCGAACC

Genomic sequence CCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCCGTATGTGATGGACATTTAGGCCATG
TTCATAAAGGTGAAGGTTATAGTACTCCAACCGATGAACGCCTTTGTGTTAACAGCGTTTCGAT
CAATTTTAACCCGGCCAAACCTTCCTCTATAACCTGAGGACTAGTTGATCGTACATTACTTTCA
AATCAGATTGTGGTGTTCAATTGTAGAATCATCATCACGTTACAAGGATCAATGTAACAGATAA
TAAGAATCATTAGTGGTTCTTAAAATATGTCTGTTTAGAAAATATATATATATATATATGTATC
CTGTTTATAACGACAATTCTCATTTTAATACATTTTAGTAAAAATGTTCAGCTTAATTTCCCCA
CTACAAAAGTTTCCACTAAAGAAAACAGATAATATCAAATTAATGGAATAAATAAGCCTAATTT
TCTTTAAAAATTGTAATGTCATTTAATAATTATTGTGTAATACTAAGAAAAGATAGCCCAACAA
AAAAATCAAAATATACTGAAGACGAATACGACGAAGGAAAATAACAGATTAATGAATCTGTTCG
CGTGTAAAGCTTACCAACATTCGGAAGCAACATGTTTTTTTACACTTTTTCGTGCTACTTAAGT
ATTGGTTGTATGGTTTGCTGAGGTTTAATGTATATGTTCATTGATACATTTGTATTATTGATTT
CAAATTAATAAAGAATGAAGATGTTAAATAAAAAAATATTGCGTAATACATTTGCATATATTTT
TTTCTCGAAAAGTGGAAGCACGACTCTGTTGCGCAAGCCATACTCTTTTGGCATTCTCTTTTCT
TAATGATAAGAAGATAAGAATTCGTGTCGTCTTTTCTTTTCTTTTTCAAAAGAATTCGTGTAAT
GGTCTAGTCACAAATCCATAAACAAGATTAGGTTTCTGATTAAAAAAATCTTGTAATTTTTAGA
AATAAATATCTGATCTCTTCCCAATAACAATTTTTGTCCCATTAGTATGTTTAACTCAGCGATC
ACTTAATATAACTCAGTCGTCACTTAAGCTAACTCAACCATTACAGAACATATCTCAGTCGTCA
CTTAATATAACTCAGCCATTATAGAACATAACTCGGTCGTCACATAACATATTTGCCAAAAAAA
AAGAGAACATAACTCAGCCTTTACAGAAAAAATCAAAACATTAACTCAGCCGTAACATAAATAT
TGATAAAAAACAGAACATAACAGAGCCGAAACCGTACCTCACCACCATTCGCTTTAATATCTTC
AGCAATGACCTATTCTATAGTTGCACGGGTACGGCTACCACCCCATCTAAGCAACGGAATCTCA
TCCGTGTTAACAACGTTCCCAAAACGCTCGGCGATGGTGATGATTGACTCATACGCCCAAGCCT
GCAACACGAAAACCAGACCACTGACGGTGTACGTCTTGCCAATAGGCCTCAGCAACTTTATAGA
AACGACAAGGGCTTCATATGCTGCCCGACCCCATGGATAAGTCTTCATGGCTTCGTCGTCGAAA
ACTCTTTTGGCACTCTCAAATGGTATCCTAGAGTTAGTATGCAAGCCAAAAAGTCCAATGGATA
GAAGAGTCAATAACCCAAACCATCTACGCTTTTCAGGAGGCCAAGCTCTGCACGTTACTAAGCC
CTGCCTAAGTTCATCTAGATTATGACCTTCACCGGTTGGCACACGCAATTCACTGAAGAACGCT
TTGTAGTCAGCTTCAGGCTCAAACTTTTCTGTAGGCAGTTGATCTATATTTAAACCCGTGATAT
GATGAAATTCGTTCAATCCAAACCGGATGGGTTTACCAGCCACGATACACCAAAGCTCCTTCTT
CAGTATTCTCAGCTGTCTGCATAGTAGATAATGTACGGTCTTACCAGACCATAGAAAATGACTA
TCAACAAGCTTAGCAATTAATCCAAGCTCTGTCTCTTTCAGTTCTGCCCATATTTCTTTTCCTA
TTGATTCTCTAATTGCAGGGAACTCTCCCAGCTTTATATTATGATTAATGCCTTTACCCTCCAG
ATTAGAATCCCCCTCTTGGTAAAGTCTTGGAGGGTACTCCCTTGCTTGGTCTTCAGACATCTGT
ATAACCATAAATCAGCCGTAAGCATTCCATAACTCAGTGATAACATAAAACAAACTCATCCACA
GATACCATAACTCAGGCAAAACATAAATCTAACTCAGCCATAGATAACATAACTACGTCATAAC
ATAAACCTATCTCAGCCACACATAACATAACTCAGCCATAAGATAAATCTAACTCAGCCATATT
TTAACAGAAACTCAGTCAAACCATAACATAACAACAGCTCAGTTAAAACATAAACCAGACTCAG
CTATATCAAAACAGAAACTCAGCCATAACATAAACAAACTCAGCCGTCATATAACAGAAACTCA
GACATCGATGTAAGGTTAAACCATAACTCAGTCACAACATAAAACAAACTCAGACACAGATGAA
TTGATAAATCATAAATCAGTCGGCAAACAAACAATAACTCAGCCGTCAAATCAAATAGATCTTA
GAAATCGGCCACCATATGTCAATCAACGACGACGTTAAAACCCAGCTTTAAAAACTATCGTTAC
GCATCGGAAAACGATTTCAGTGACGGGAATCACTTGCGATTGAACTTAGATGTCAGAGTCTTAC
TTAATGGAAACATACTCACCGGAACTTAGATGTCGAATGTGACTTCGCGCTTACGGAAATGCGA
CTGCGGCGTCTGAATTTCGGCCGGAACAGACGAGAAAAGAGCAAAACGGCGAAAGAAATCGATT
TCGTTCCGTCGAGAGAGAAAGAGGAAGAAAGCGACAGTTTTTTTTTTTTGGGAGATGATGAACA
GTAAAGCCAAGAAATAAGAAACCCAAACGTTATGCGGTTTGGAGATGATTAATGACGTGGATTA
TGGTAATGACATGGAATGATGACATGTATAATCACTGTTTTTTTATTTAATTTTTAGTTAAAAA
CGAATTAAATAATAATAATTAATTAAAACTAGTTAGGGGTGTTAATTGTAATTACACAATTACT
AAAAACATCTGAGTAATAAAAAAAAGATGTGTTCTATTTTAGGAATAAACATACAAATGTGTTT
TATCTTAGGAATTATTTCTTAAAAAATCTTGTAATTTTTAGAAATAAATATCTGATCTCTTCCC
AATAACAATTTTTGTCCCATTAGTACCAAAACCATATTTCAATTTGGGATTTATTTCTATAATA
TCAAACCCGAATTTTGTAAACCGAACCGGGACAGGATAATGGGACAAATGAGCACTTGTATTAT
CACGTGCATTAATCATTCACCAGTTTTATAGTAGATCACAGTGGTTCATATGTATCTAGACGCA
AACTTTGAATCATTCATCAACGCAATCTAAGTACAAATATAGATCTCACTGCAATGTTTCAAGC
ACCAACCTGATCATCATCAAAACCATTTCATCCGTAGTGGTCAATGGCGGCTTCTCCGTTGGTG
GTTCAGAAAACAGAGGAGGAGTGGCGTGCGGTTCTTTCTCCGGAGCAGTTTCGTATTCTTCGTC
AAAAAGGCACTGAGTACGTTTTTGTTTTGTTTTTCTTTCCCTTTTGGTATAATTTCTTTTAATG
AAATTTTGGGAATGATTTTGATAGTGCCCTTACGTATGTTGGATTAGCCATTAGACTTGAGTAA
TTTAGGGTTTCATAATTAGCATCATACATGTGAGTATGTGACCTTTTGATTTGAGTCTTTTTAC
CCAAGAATACCTACGTGGCTTGGATTCAGAACATTGTTGCTCGTTTAATATATTAATTAGGCTG
CAAGCAACCGTTGAAAGATTATTATAGATGTAGAACCAATTAGGGAAATTGGATGATGTTTTGT
TTTTGGAATTTGGTTTTGTTTGTATCATATATAAGGAGAGTATTGATTCAGTGTTTCACTGTTT
CATATAAGTAGTTTATTGAAGTATGTAATGATCTCAATGTTCTTAAGGTTTGTTGTGTTTTTGT
TGTTCAAAATATTTTAGAAAGCCAGGAACTGGAGAATATGACAAGTTTTTCGAGGAAGGAATCT
TCGATTGCGTAGGATGCAAGACTCCTCTTTATAAATCAACCACGAAGTTCGATTCCGGATGTGG
CTGGCCAGCTTTCTTTGAAGGACTCCCTGGTGCCATAAACCGAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.655119619
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017