Detail information of BGIOSGA034971_circ_g.1


General Information
CircRNA Name BGIOSGA034971_circ_g.1
ID in PlantcircBase osi_circ_009346
Alias Chr11:4797906_4798747(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4488092-4488933  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA034971
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA034971_circ_g.2 BGIOSGA034971_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA034971-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAAAAAAGGAGGTGAGACGTCTGGCTGCTTGGGGTGTAATCAATGTGGTAAAAGCAACATGG
TTAGAAGACTGCAACAAAGCAAAAAAGGAGGTGAAAggtgacaagtatgttgtggcccaaaaat
ggggtaatatccacatagtagttcccaaatggatcgaccaatctgttgctcgaaaaggtaaaac
aatctacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGACAAGTATGTTGTGGCCCAAAAATGGGGTAATATCCACATAGTAGTTCCCAAATGGATCG
ACCAATCTGTTGCTCGAAAAGGTAAAACAATCTACCTACATGGGCTATTATTGATTTTGCTGGT
GTGACATGTTTGTTTCTCCTACAGAAACTCTAAAGTTTGTAAGGTTAAACTAACTTCATGATTT
CTTTCTTCACTGAAAAACAGTTTGCCTTGATGAAAGTGCATACCTTGTTTGTCAGAATTCCACT
AATATTAATGGTGTAAAACATTCCCTTAAGGAGCAACACAACCCTGAGATCAGTAGTGCAAGTT
TTCAACCTGTTCCAACAACATCTGTAGATGACTCAGTATCAACGTCACAGTATGTGCCTGCTTC
ATTTGATGACGCTTCAAAGATCTGCAGTACTGATATTGGCGCACCTAGTTTCCAAGAGACAAAA
GAACTACAGGTTGATAGCCATGTTGCTGAGGACTCAGAGGCAGAAGATGATGACCTTTATTTAT
CAAATTGTAGAATTTCTCTGGTGGGTTTTGAGGAGAAAGAGTTGTCAAGATTAGTCATGATGAT
ACGCAATGGTGGTGGATCCCGGCATGTTATGTTAAGTGAGAGACTCACACATATTATTCTTGGT
GCACCATCAGAGGAGTAAGTTCATCCTACCATGTCTTCTTCATTTGCCAGTTTTATTGTGAACT
GGGTAAGGTAGCAGCAAATGATACTTATGTCTTAGCAGAGAAAAAAAGGAGGTGAGACGTCTGG
CTGCTTGGGGTGTAATCAATGTGGTAAAAGCAACATGGTTAGAAGACTGCAACAAAGCAAAAAA
GGAGGTGAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021