Detail information of Solyc07g062140.2_circ_g.1


General Information
CircRNA Name Solyc07g062140.2_circ_g.1
ID in PlantcircBase sly_circ_002400
Alias SL3.0ch07:65073763|65078639
Organism Solanum lycopersicum
Position chr7: 64943147-64948023  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc07g062140.2
Parent gene annotation Trehalose-phosphate synthase 1
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Solyc07g062140.2.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTCTACCTTGATCTTCTACTCCTTCAGGTGTTCCTTCAAGTCCCAGGATACGAGTACATGCA
CTAACAAAATGCCTTGCATAGTCATAGGTATGAAAAcctcacaaaagtctcagcccattcttga
gcagtatgcgtagtcacatgcagaaagttatgcctgtggcgtttttctctttcttcagctgaca
tatttaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCACAAAAGTCTCAGCCCATTCTTGAGCAGTATGCGTAGTCACATGCAGAAAGTTATGCCTG
TGGCGTTTTTCTCTTTCTTCAGCTGACATATTTAAAGCTTGCCCAATCGAAGCAGCAACCTCTG
TTATATTCCATGGATTCACCAGAATTGCTCCAGCACCTAACGATTGTGCAGCACCAGCAAACTA
TAAACAGAGGAGGCACAATACAATCAGTGACTTGTGCAGCACCAGCAAACTATAAACAGAGGAG
GCACAATACAATCAGTGACCTAAAACAAAAACTTGATAAAATATCATAAGATTTTTAGTAATAA
AATTCATGCATAATTTTTCGAAATTTGCTTTTTTAAATGCAAAGCTATAAAGTTATCATTTTAA
GAATTAATTCACTATTTATTTTCATGAACATATAAAAACAATTGTTGTAAAAAAATTAAATTTA
AAATAGTATATAAAAATGTCATAAACAGAGGGGAAAAAAAGAAGAAGTAGGAAGAAGAATGAAG
GTATGGTTAGCTTTGTCAAAATCTTTTTATTGCAAAATACTTTTCTTTTCATTTGGAAAAAGGA
TTGTGTCAAATATTTTTATTGGAAACTATAATCTTGTTTTTTTTCTTCTATAAACGGTTAGCTT
TGTCAAAATTAATTAGCAAATAAGCACGAAAACATCCATAAGGTTATGTCTAATTTTATTTTTC
ATTTTATTGCTTCACAATGCCGAAAAACATAAAATAATTTTTAAAGAAAAAACAATAGTAATTA
TGACATGAGAGGAAATAGCATTGCAATAAGATATATGATTATTACTTCGCTGAGAATAAGGACC
CCTTTTTTCAACTCTTGGCAGGCTACAAATTCATAGCTGACGAGGTTCATGCCATCTCTTAAAG
AGGTAACCAACGCTACATCTGATGAACAAAACATTGCCAATTTATCAAATAAAATAGGAACTGA
CATGCAACTACCAAAAGAAATTAGCTAATGAGGAAAAACAACTGAATTATTAATATATATATAT
ATTTAAATTATCATCATGTCAATATTATTATTTCACCATTCTATAATCTTGAACAAATAGGAAT
ATAACAAATATGATGGAAAAAGTAGCATTAGTAAAACCTTTCGTTTTCTTCAAGATAACAATAA
GGAAAATATGGACTTTGGCATGTATATGTTTTCAGAATGTGTCAAAAACATACTTATCCAATCA
TCCCTCATTCAGATCCTGGAGCACAACTTATGCATTCTCTAGCGAATAAAGTTATGGACCAACT
CCAGATTTACAAGCTTATATCCAATTTCTAGAAAGTCCAAATGATGCAGATTTATTTGAGAACA
TACAGAGGCCTCAATCAATCTATTCCATTGCCAAACTAATTTGTTATGTCCAGAAGAGTAGTGA
AACTACAAGATTTTTAAGCTTTGGTGAGTAATTAGCAAACCTGAAGGGGAAACAACCTTAAGAA
AAACTATGCAGAGATATAACCTTTCTCGAGAACTATGATATTTAGGAGGACATCCATTTATAAC
ATACATTGCTAACCTCTTCTCATTGTTTATGTCAATTCCAATAGGACTCACACCAGGTGAGATC
ATAGGTGAGAGGATAAGCATGTACTAGTAGTGCCTTCAAAAGAACTGAAGAAGAAAATAGCAAG
ACTAAACATAGATGAGCAGAAACAACACTATCTTTTTTATGACTGTGGTGTCCGGGTTAGCTTT
AGCCCACCTCAACTAATCCCCCCCCCCCCACCAGCAACAAGTACTAGGTAACTCTATCCACCAA
GGCTAGGATAGATGGGAAGAATCACCTAGTGTGGAGAAACAACTGAAGAAGGGGGGGGGGGGGG
GGGCACGAATGGTGTATGGAAACTTCTAACAGAACTATACAAGAATCGCAGAAGTAAGGAAGCT
TCTAACAGAACTATATAAGAATCGCAGAATTAAGTGCAAGATGAAAAGAATTACCAGTTACAGC
ATACAGTGCACATAATGCATGAAAGTCAAGAGAACGGTCCTGCATTTAAAAACCCATATTATCC
ATATTTCAGTCAAGAGAATGGTCCTGCATTCAAGCACAATGAATATGACAAAAAAAAAAACTAA
CCAGATGATGAATAGGCACTGCAGTCAAAGTTCCAAACCGACCATTGATGCGTCCAACAATCTC
ATGAACTTGACTGGTAAGTTTTTGGTCTGCAAAAATATTAAGGTGAAAGCAAGTAAAATATCAT
ACTTAAGCAAACATATAGTATGACAAGCATCTGCATTTATGACCAAGTAAATCTCATTGAAACT
CGACAGTTTTAAGGTCCAACCTGGTTTTTGTCAATATATTAGCATTACAAACATCAATTTTGTT
ATAAAGTGAACCAAAGGAAAAAGCAGATAACCAACTCAACTAATTTTCTCAACAAGTTCTATAG
ACTACAGATCATCATTGAGCCCCAAGTATAACGTCATACACAGCGACAACAACCCAGTGTAATC
CCATAAGTGAGGAACAAGCAATGATTTAATACAATTTTCTAATTGTATTGATTGATTGATAAAG
GATCCACTGATATTTTGTATTCGATGTTTCTGTTCCAGCACAAAACTTCATAAAGGCTAGTGTG
GATGGTAAAATAAGGCAGGATTCTCTTAACATACAGATTAACATCAATGAATGCCTTCAAATAT
CTTAACCAATATGGCAAGTATACATTAGGTTTAAGACAGAGAGATGGAAAGTGGAGAAAAAATA
GTAGAAGGAGAAGGAGAGAGATTAATCTAATTTAGTCGGTTATATCTACTGTGCATCTATCAGC
GTCTTTGGTAATAAGTTGGGACTAATCACGACGATCACATGGTTCCTAAGCATATATATCGAAC
AGTAAGGGGGCATTATATTCTGCACTAAATAGATTCATGATGGATTGCTGGTGGTGTATGTCCT
TTTCCTGGCCCTTAAGTCCGGATCATTAAACAGGATTTTCAAATTTTCAGTTTGGTTTAGGAAT
ATATGATGCTCCTTTAGAAAAAATTTTAGGCTTCGACCAATAGACTTATGAATCAAAGACCTCC
ACTCAGCCATCAAAATATCTGATGACCGTACTGAACCAGTATAGTGGAAAACAAACTTTCCCTA
AAGGTAGTAATGATAATAGGAGAAGTGGAAAATATAAATTAACTTAAGGCATAAAGAAGAACTC
AGAGTGGATCTGCTCGAGAAAATACATTCAGGAACATCTGTTCTTGTTGGCACAGCAATTTGAA
GCAAAACCACTTTATCACGCCAGTACGGATTTTCTTCAAGGAACTTCTCAAATGCCAGGATCTT
TTGGGGAATTCCTTTAATCATATCAAGGCGATCAACTCCTAGCATAACCTGTGATTAAATTTCT
TTAGCAAAAACCAAGCAAGTATGGAAGTTTCTAGGACATGCAATTAAATATCTCTAATGCATGG
CCAATGCATAAAATTGTGCAATAGATACAAGTGGGCAAAACAGAAGAAAGTGATATGAGTTTGA
TGTACATAAAAGTGATAAAACAACATAAGAAATGGTTAGCAAGAACACTAGACTGACAATTTTG
CAACTAAAGGTGAGGAAATCCAGTTAGTCTTCAAAAAAGCTGAAATGTTCATGAATTAGAAGTA
AATAAACTTTCACCTTCTAATGAGAGAAGCCATTGTGACTTTATATATAAACAGAAAAGTGGGG
AAATACATCTAAACCTAGTAAAGCCACATGGAAATTCCAAGAAGCCACATCTGCTTGAAGACCA
AAACAACAGAACGCAATTACTCCTGACAAATGCAAACAAATCTCTTTTTCTTCCTTTTTCCTTC
TCTCTCTCTCTCTCTCTCTTTTGTTTTTGTCCAATTTCAACACTTAGATATCTACTGTTGGATA
ATAGAAGAAGTTTTAGTAAGAAACATCTGACTCTGTAAATGGTAACTATACCATCTAAAACAAC
ACAAACATGTATTTATCATTACACATATAAGATACCCTTTCTAGTGTGTAGTGAACTGGAAAAA
TTTTGTTTGATTAAAGCACATGAAAATGTAGTGATGACAGGTCACAGTAGGATTTGAAAATATC
ATACTATTATATATGTATCACCCACTTTGGTTTGAACGACATCACTCATAAGGTATAATTTTCA
TAAGATGATGGTAAAATTGGCCAAGATGGATTCAGGTCTTGACCAAATCTGGCTTAAGGAACTA
TAGGTAGAAAAAAATACAACGTCGACTGAATTCAAGGCCAAGATTTCACAATTAAAAGTAGACA
ATGAAATTGGTGAAGAAAGTCTCAAAAAGCAAGTTTTCCCCCAAGGTGATGCACAGCATGTAAA
ATCGAACACTTACAATTAGACAAAACAACAAAATATTTCTTACTTCATGAAAATGATATCATGC
CAAAAAAGTAAAATTTGGTGAGATGGAGAGAGGATCCAGAGTCGGGATAGACATACCTTTCTCC
CAGCAAATCTCTCTTTTAGTTCTTTTATGTGTTCCTGAACTTGAGTAACTTCAAGTGCTCGAAT
AAATCGTTCTGAATCTATACCAATAGGAAACTGTACGAACAGGAACAATTTAAAATGGCTCAGA
AAGAAATCAAAGTAGATATTTCTAAAATGACTCTGAAATAAATCAAGTAGATATTTCTCAAGGC
TAAGTACATAAAATTGCTTAGATGAGGATTACAGAAGTTCTTGAAAAAGAACTGCAGGGTGAAT
GTGTATGAAGTTTAACTTAAACATACCGCAGCAACGCGGGTCAGTCTACCTTGATCTTCTACTC
CTTCAGGTGTTCCTTCAAGTCCCAGGATACGAGTACATGCACTAACAAAATGCCTTGCATAGTC
ATAGGTATGAAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.153891414
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress
Other Information
References Yang et al., 2020