Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05010_circ_g.1 |
ID in PlantcircBase | ath_circ_000755 |
Alias | At_ciR1662, Ath_circ_FC0180, AT1G05010_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 1431807-1432518 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene | AT1G05010 |
Parent gene annotation |
1-aminocyclopropane-1-carboxylate oxidase 4 |
Parent gene strand | - |
Alternative splicing | AT1G05010_circ_g.2 |
Support reads | 6/293/4 |
Tissues | leaf/aerial, whole_plant/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G05010.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.503235209 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1432471-1431809(-) |
Potential amino acid sequence |
MTKEHYKKCMEERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDYRTLMK DFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTD AGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLECVNHGISLELLDKVEKMTKEH YKKCMEERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDYRTLMKDFAGK IEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGII LLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLECVNHGISLELLDKVEKMTKEHYKKCM EERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDYRTLMKDFAGKIEKLS EELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQD DKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLECVNHGISLELLDKVEKMTKEHYKKCMEERFK ESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLD LLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSG LQLLKDGEWVDVPPVKHSIVVNLGDQLE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Zhang et al., 2019 |