Detail information of Os10g0575200_circ_ig.1


General Information
CircRNA Name Os10g0575200_circ_ig.1
ID in PlantcircBase osa_circ_008152
Alias Os_ciR6919
Organism Oryza sativa
Position chr10: 22873799-22874730  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0575200_circ_igg.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATAGCAGGAGAATCCATATCTCTAAAGTCCAAGCACCAGCGCAGATCACCAGAATGTCCTTC
AAGGAGCTCAATGCCCACTGAAGTAACCTTGAGTTTctcataattctccggtcgtctttcgaca
agtgaagtgtttgtaagaacaagctgtcgagaaacggaatcaccatgatctccaagtccccccc
ttggtcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATAATTCTCCGGTCGTCTTTCGACAAGTGAAGTGTTTGTAAGAACAAGCTGTCGAGAAACG
GAATCACCATGATCTCCAAGTCCCCCCCTTGGTCCAATACCCAAGCTCAAGCTCTCAATGCTAG
CAGTGCCATGTGCAGCAGGACGCAATCTTGTTACTGACCATTCTCCATGCCGAGTTTCAGCAGC
TCCAACAGCCTCGTTTGCTGGGAAAAGAAGTTACACCAGTTTAAGTTTCTGCTCCCTTTAGCGC
AATAGATACGGGATTATGGAGCTCATACATGACATATACATGGAATTCATTGACAGTTGAAGGT
GACATTTCATACTGAGTCAGTTCGTAATGATTTGGAACCATAACCCCAGTTAAGGTGTTGCCTA
GCATCAAAATCATATGAATGGCAAGGTGCCATACGAAGATGATGCACGACAGTCACATAAATAG
GTGTAGAAAAATGGTAGCACCAAGGTGAAGCTTATCGTTGCAAGAGATTCAAAGCCTACCTCTC
TTTGCTATGAAGTCAGTAGCTGTCATTGACTGTGAATTGTCCACATGTAGTGATACTCCAACCA
TCGAGTTGGCTGTTTTTGTCTGTAAGATAACCGGCATTAGGATGTTACATCAATATGTGTAATC
TGCATATCATGTAGAAAGGAATGGAACGATTGGACAATGGGATGACAGAAGGGTGTACCAAATA
TGATATAATCAGAGTGTTTGTACTGCCTGAAGCAGCCATAAATGCTTTGGACTTCCTCCCATAA
AGGGGGCATAGCACAAAACCTCCTCCTTCAGCAGTCCTCTTCCCATAGCTATCCCCCAAGAGAA
TGATAGCAGGAGAATCCATATCTCTAAAGTCCAAGCACCAGCGCAGATCACCAGAATGTCCTTC
AAGGAGCTCAATGCCCACTGAAGTAACCTTGAGTTT
Conservation Information
Conserved circRNAs osi_circ_002987*
PMCS 0.276828147
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015