Plant Circular RNA Database

Detail information of BGIOSGA024959_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA024959_circ_g.1
					
						ID in PlantcircBase
						osi_circ_017614
					
						Alias
						Chr11:29241541_29245909(ZS97RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr7: 502844-507223  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ie-circRNA							
									
						Identification method
						CIRI2, find_circ
					
						Parent gene
						
							BGIOSGA024959						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							TG-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA024959-TA:1

General Information
CircRNA Name	BGIOSGA024959_circ_g.1
ID in PlantcircBase	osi_circ_017614
Alias	Chr11:29241541_29245909(ZS97RS2)
Organism	Oryza sativa ssp. indica
Position	chr7: 502844-507223 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ie-circRNA
Identification method	CIRI2, find_circ
Parent gene	BGIOSGA024959
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	TG-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA024959-TA:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTATTACCTTTTCAGATATTCCACCAGACTGAGCAGCACTCAGAAGAACATGCTCCACCCCTCT
TGCTTCATCAGGTTTGACCAAAGCTATGCGGGAGACcattttccctctgcacataatcgtcttc
agatcctgcttgggcatcttcaggtggtgatcctgaatccacaatatgtggatgtacatgccta
attttctc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATTTTCCCTCTGCACATAATCGTCTTCAGATCCTGCTTGGGCATCTTCAGGTGGTGATCCTGA
ATCCACAATATGTGGATGTACATGCCTAATTTTCTCACTTGAGATTTCCACCCTTGTACGCTTC
TTAAATCTTGAGCTGATGCAAAACAGTGAGGAAAATCAAACAGAGAATGAAGCATTGTCAAAAT
AATATAGAGAAAGCATATCGTGATACCAGCACGAAAATGTTTGATGTCTTCGATCAACTCCCTC
GGCCATAAGCTGAAAATAACTGGTATTATGAGTTATCTAGACAATTGAAATGGAATGTTTTGAT
GTTTTATATCACTAATTTACCTCTGTTCTCCAAGAATCAGTCTTCAGACTAACATTAACAACCT
GGCACTCTTCAGATATCTGTGCAAACATAAAAAGAAAAGGTTAAATGACCTATGAGAAGGAGCA
ATAAGATCTTGCAATGGAGATTCTGGAAGTTTACCAACCCAAAACTCAGTGGAAAAGGACATGC
GATGCGTTTAGGTGACATCCTAGACCCTAGTATAACAAAAGTCACGATATTAGATATGACTTGA
TAATAAGTGAAATGCAAGTCTGCAGAAAGAGGATAAAAAAGCACATGGACATAATTTACTCACT
GGGTTTGGAATAAGAAACGATGCAACATGATGACAAATGAAATAACAAAATAATACTATGTGTT
ACTCCCTCAGTCCCAAAATATAGCTACTTCTAGCATTAAAAATTTGTCTAAAAATATAGCTACT
TCACCTACTTCCTAATCTCAACCATCTCTCATTTAATTTCTCCACCTACTTCCTCATTTCAACC
AATCACAACAATCCCTAAATTATTTAATTTCACCTCTCCTTAATCCCCCGTGAAAAACTCCAGA
AGTGCTTGATGTTGGGAGTACCATAAATATATCAGGTGAGATGAACCTTGGGACCAGCTGTTGG
CAGCAGTTAGTGACATCTGAATCAACTCAGACAGAAGAAAATTTGTGCCTGGGCGGAATGACGG
TGAAGAAGTAGTGGATAATTAGGAAAGACATCAGATGCTGAGATATAGATGGAGTAAAGAATAA
GCAAGTCTTGGTTAAAAAAAAGAGAATAAGAAAGCAGGGACTCATAGAGAAGCAAACTGCAGCG
CTAATCAGATATAGGCATCTACTGCAGCGCTAATCAGATATAGGCATCTTGATACCTAGTGGTC
TCTAGTGCAACTAAATTTTCTGAAGTATCATAAAAGAACGAAGGCATTTATACATGCTGATCTA
TCCAGCTTATGTTTAAAAGGGGATAGTAAACTGCTTCTGAGACACAAGTGAATAACACTTCGAT
AACACAAGTTAGACTCATAGGTCATGTATATGTATGAATAAACTAACGCGGTAACGCCAACCAG
TTTACAAAACAAATTTAGGACCACACTGTACAGATGCCAACATAGATCAATGGAAGTGGCAATA
CACAAGTATCTCACCTTCCAAGCACAACCCATGGGAATGATAATGTACAGTGTGCTTACGGTTG
GGATCATCAGGCACTCACCGGCCTCATCTACTAAACAAAGGCAAGGCAAAGAGAGACATTACGA
GCTTAGCAATTAGCGATGCCAACACGTTGTAGCAGGTTGTTCAGGATAAAAAATATACCTCCCT
TTAAACTCAAAACCAGAAACTTTAGCGTATATAAAGTTAACCCTATATTACAGCTTACAAATAT
GAGCCGTAATATCTGGTTTTTGTTTTGCAAAATCACAGGAATTTATAAATAATTAGTTAGAACT
ATAGACCCTGATGAACCTATGCTTCCAGCTAAAGGTTCAAATACTATGTTCAAGATCAATCTCT
TGCTTTTGGTTTCTCTTAATATACTTTAATTTTCAATTTCTGGTAGAACTGAATTTGATGAATA
ATTAGTTTATCATGATCGCTAAAATCTTTGAGTTAATCATACATGCATAATACAATGATAGAAT
AATTTACAGCCAAATACTAAGTTCAGTAACCATATAGAAAGTTTGAACATACAGACTTAGTAAG
TCAAATAGCTGCTTAAGATCTTAGATTACTGAGTTGTTTTTATCATGTACTCACAGAACAACTT
GATGCTTGGTTGATCACAGTAGTATATCCTCCCATCTGCTGACCATGAAAAAACAAATCAATAA
TTCAGGAGCCTATGGCATATGCTATACAGTACTCCAATCATGTGATCTAAATTTATTTTCAGTT
ATAATATTAAGGTTCTATCTATAAACTGGAACGCCAAAGATTCTGCTTGCTTTTCAGGGAGAAG
TAACATCTAGTTTTTAACATTTGATAGCAGAGCAGTCTCAAATCTCTAATTGGTACGAAAGCTA
AACACCTTCAAGCTAATTAACACAATCTACTGACTAACTGCTTTGGCTTTCTATCTGCCTTGGA
AGAATATGTCAACCTCAGGAACAAATGATTACACAATTTCACAATGCATAAAGAGTATACATGC
TTTCTGATTCAGACCTTTATAGATATGAGTAGTGTCCAACTCTGCTGCTAGGCAGCCTAGGCAG
ATCTTCATGCCTGTTAACATGCCTTCCCATTGTTGTCTGCCCAGCTTAAAACTATGACAAAACA
ACAAAAGAAGAGAAAGCAAATAAGCTTGTAAGTGTAAAAATTATCAATAGGTGGTGCACATCCC
CAGTCCTGGGTTGTCCTGTAGCTCAGATCTATGCTTATTTTTTTCAATGACACCATGTCCAGGT
CCTCTTAGATATTCTCCCATTACCCACATTAAGAGTCACCACATATTTATTCATTCATATGAAG
AAGAACAATGCCTATTTTCTCCTAGGTGTTCCTTAATTGCTAGAAATGAATACATGATGTAATT
GCTGCACCACTTCATTTATTATATTGTATTGATACACCTATCAGTGTGCAAAGTATTTCTAGTA
ATGTACATATCTAGCAGATAAAACCAATGTCACATTAGTTTTATTTGAGCCATGTTATTATATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTA
TGTATGTATGTATGCTCATATTTTAGTCAATATGCTCATGTTTTACCACTTGCTGATTTTTGGG
TAATTATTAGTATTAGCTATGCAGAGTGTACTTACATTCGGACATTTCTCACATAACTGGGTTG
CTTGACTAACTTTCAGCCAAATACTTCCATAGTGGTAAACGCACATCAACAAATGCGATTAGTT
TATCGAGTCCAGAAATTTGATATAGATTTCCTCCAATTAAATCAAGGATGATTTCGATAGAAAA
AATATTATTTTTAAATAAAATAGAAAGTATCAATACCAAAGTAGCAGTATGCAGATAGTGTAGG
GTAAAATATGTCTATTTTTTGGACTTTTCACAGAATATTGAATTATGACAATTCCAAATTTTAG
CAGTTGCGTAGCTACTTCCTAATGACCTCTTGACTATTGATAGATTTACGTAATAAGGGAAGCA
CGGAAGGCAACCTCCAAACCTGTGCTTGTACGCCGATGTGAACACCAGAAATATCTTGGATGGC
ATGTGTCTACCACTGCTGAAACTTTAGGATTGTATACAATCATGAAGAATGACTGTTCTTCTTC
TAGTTGAACTTTTGTAATCTGCATAATACAGTGTAATATTTTGTGAGATGAGCAATTTTTATAT
AATGCAAAAAAAAAAGTTTAGAACTTGCACTGTATGATTCTTTTCAAAGCAGGGCTGAGAGTTA
TACAATACATATACTTGTCAAAACAAACTCTAAATCCATGTTCTGAGTCACTACATAAAAGAAC
AGCTTACAGTGTGCAGGTTTTGCAAATTCAAATATACCAGCTTCTCAAGAGGCAAGCCCCACTC
CATAGCAAAAATCATAAGTGAACCAGAGGGTAAAACATACAGAATACACTAAATTCCTAAAGAT
ACATACAACAACACACAGCTAATGCTCTTTCCAGATACATTAGCATCAACAAGGAACAATGATG
GAGAATACACGCACGGCAGATTTGTTTAGTTAAGTGCACATGGTATGCCAAAAACTGGTAGAAG
TTTCCATGTTTTTCATACCGTAACTTTCGTTTGTTTGCTAGTGCGGGTATTAATTTGCTCCAGA
AGTGAGATGAGCCTTTCTTTAGACACCTGAAAGCCAGAAAATTCCCCCCAAAGAAAGTCAGCCT
TCAGATAAATCGTTCTTCTGATTCTCTTGACACAGCAAAGAGTATGCTACCCGCCTCTATTACC
TTTTCAGATATTCCACCAGACTGAGCAGCACTCAGAAGAACATGCTCCACCCCTCTTGCTTCAT
CAGGTTTGACCAAAGCTATGCGGGAGAC
						
					

			
		

Sequences
Splice junction sequence	CTATTACCTTTTCAGATATTCCACCAGACTGAGCAGCACTCAGAAGAACATGCTCCACCCCTCT TGCTTCATCAGGTTTGACCAAAGCTATGCGGGAGACcattttccctctgcacataatcgtcttc agatcctgcttgggcatcttcaggtggtgatcctgaatccacaatatgtggatgtacatgccta attttctc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATTTTCCCTCTGCACATAATCGTCTTCAGATCCTGCTTGGGCATCTTCAGGTGGTGATCCTGA ATCCACAATATGTGGATGTACATGCCTAATTTTCTCACTTGAGATTTCCACCCTTGTACGCTTC TTAAATCTTGAGCTGATGCAAAACAGTGAGGAAAATCAAACAGAGAATGAAGCATTGTCAAAAT AATATAGAGAAAGCATATCGTGATACCAGCACGAAAATGTTTGATGTCTTCGATCAACTCCCTC GGCCATAAGCTGAAAATAACTGGTATTATGAGTTATCTAGACAATTGAAATGGAATGTTTTGAT GTTTTATATCACTAATTTACCTCTGTTCTCCAAGAATCAGTCTTCAGACTAACATTAACAACCT GGCACTCTTCAGATATCTGTGCAAACATAAAAAGAAAAGGTTAAATGACCTATGAGAAGGAGCA ATAAGATCTTGCAATGGAGATTCTGGAAGTTTACCAACCCAAAACTCAGTGGAAAAGGACATGC GATGCGTTTAGGTGACATCCTAGACCCTAGTATAACAAAAGTCACGATATTAGATATGACTTGA TAATAAGTGAAATGCAAGTCTGCAGAAAGAGGATAAAAAAGCACATGGACATAATTTACTCACT GGGTTTGGAATAAGAAACGATGCAACATGATGACAAATGAAATAACAAAATAATACTATGTGTT ACTCCCTCAGTCCCAAAATATAGCTACTTCTAGCATTAAAAATTTGTCTAAAAATATAGCTACT TCACCTACTTCCTAATCTCAACCATCTCTCATTTAATTTCTCCACCTACTTCCTCATTTCAACC AATCACAACAATCCCTAAATTATTTAATTTCACCTCTCCTTAATCCCCCGTGAAAAACTCCAGA AGTGCTTGATGTTGGGAGTACCATAAATATATCAGGTGAGATGAACCTTGGGACCAGCTGTTGG CAGCAGTTAGTGACATCTGAATCAACTCAGACAGAAGAAAATTTGTGCCTGGGCGGAATGACGG TGAAGAAGTAGTGGATAATTAGGAAAGACATCAGATGCTGAGATATAGATGGAGTAAAGAATAA GCAAGTCTTGGTTAAAAAAAAGAGAATAAGAAAGCAGGGACTCATAGAGAAGCAAACTGCAGCG CTAATCAGATATAGGCATCTACTGCAGCGCTAATCAGATATAGGCATCTTGATACCTAGTGGTC TCTAGTGCAACTAAATTTTCTGAAGTATCATAAAAGAACGAAGGCATTTATACATGCTGATCTA TCCAGCTTATGTTTAAAAGGGGATAGTAAACTGCTTCTGAGACACAAGTGAATAACACTTCGAT AACACAAGTTAGACTCATAGGTCATGTATATGTATGAATAAACTAACGCGGTAACGCCAACCAG TTTACAAAACAAATTTAGGACCACACTGTACAGATGCCAACATAGATCAATGGAAGTGGCAATA CACAAGTATCTCACCTTCCAAGCACAACCCATGGGAATGATAATGTACAGTGTGCTTACGGTTG GGATCATCAGGCACTCACCGGCCTCATCTACTAAACAAAGGCAAGGCAAAGAGAGACATTACGA GCTTAGCAATTAGCGATGCCAACACGTTGTAGCAGGTTGTTCAGGATAAAAAATATACCTCCCT TTAAACTCAAAACCAGAAACTTTAGCGTATATAAAGTTAACCCTATATTACAGCTTACAAATAT GAGCCGTAATATCTGGTTTTTGTTTTGCAAAATCACAGGAATTTATAAATAATTAGTTAGAACT ATAGACCCTGATGAACCTATGCTTCCAGCTAAAGGTTCAAATACTATGTTCAAGATCAATCTCT TGCTTTTGGTTTCTCTTAATATACTTTAATTTTCAATTTCTGGTAGAACTGAATTTGATGAATA ATTAGTTTATCATGATCGCTAAAATCTTTGAGTTAATCATACATGCATAATACAATGATAGAAT AATTTACAGCCAAATACTAAGTTCAGTAACCATATAGAAAGTTTGAACATACAGACTTAGTAAG TCAAATAGCTGCTTAAGATCTTAGATTACTGAGTTGTTTTTATCATGTACTCACAGAACAACTT GATGCTTGGTTGATCACAGTAGTATATCCTCCCATCTGCTGACCATGAAAAAACAAATCAATAA TTCAGGAGCCTATGGCATATGCTATACAGTACTCCAATCATGTGATCTAAATTTATTTTCAGTT ATAATATTAAGGTTCTATCTATAAACTGGAACGCCAAAGATTCTGCTTGCTTTTCAGGGAGAAG TAACATCTAGTTTTTAACATTTGATAGCAGAGCAGTCTCAAATCTCTAATTGGTACGAAAGCTA AACACCTTCAAGCTAATTAACACAATCTACTGACTAACTGCTTTGGCTTTCTATCTGCCTTGGA AGAATATGTCAACCTCAGGAACAAATGATTACACAATTTCACAATGCATAAAGAGTATACATGC TTTCTGATTCAGACCTTTATAGATATGAGTAGTGTCCAACTCTGCTGCTAGGCAGCCTAGGCAG ATCTTCATGCCTGTTAACATGCCTTCCCATTGTTGTCTGCCCAGCTTAAAACTATGACAAAACA ACAAAAGAAGAGAAAGCAAATAAGCTTGTAAGTGTAAAAATTATCAATAGGTGGTGCACATCCC CAGTCCTGGGTTGTCCTGTAGCTCAGATCTATGCTTATTTTTTTCAATGACACCATGTCCAGGT CCTCTTAGATATTCTCCCATTACCCACATTAAGAGTCACCACATATTTATTCATTCATATGAAG AAGAACAATGCCTATTTTCTCCTAGGTGTTCCTTAATTGCTAGAAATGAATACATGATGTAATT GCTGCACCACTTCATTTATTATATTGTATTGATACACCTATCAGTGTGCAAAGTATTTCTAGTA ATGTACATATCTAGCAGATAAAACCAATGTCACATTAGTTTTATTTGAGCCATGTTATTATATA TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTA TGTATGTATGTATGCTCATATTTTAGTCAATATGCTCATGTTTTACCACTTGCTGATTTTTGGG TAATTATTAGTATTAGCTATGCAGAGTGTACTTACATTCGGACATTTCTCACATAACTGGGTTG CTTGACTAACTTTCAGCCAAATACTTCCATAGTGGTAAACGCACATCAACAAATGCGATTAGTT TATCGAGTCCAGAAATTTGATATAGATTTCCTCCAATTAAATCAAGGATGATTTCGATAGAAAA AATATTATTTTTAAATAAAATAGAAAGTATCAATACCAAAGTAGCAGTATGCAGATAGTGTAGG GTAAAATATGTCTATTTTTTGGACTTTTCACAGAATATTGAATTATGACAATTCCAAATTTTAG CAGTTGCGTAGCTACTTCCTAATGACCTCTTGACTATTGATAGATTTACGTAATAAGGGAAGCA CGGAAGGCAACCTCCAAACCTGTGCTTGTACGCCGATGTGAACACCAGAAATATCTTGGATGGC ATGTGTCTACCACTGCTGAAACTTTAGGATTGTATACAATCATGAAGAATGACTGTTCTTCTTC TAGTTGAACTTTTGTAATCTGCATAATACAGTGTAATATTTTGTGAGATGAGCAATTTTTATAT AATGCAAAAAAAAAAGTTTAGAACTTGCACTGTATGATTCTTTTCAAAGCAGGGCTGAGAGTTA TACAATACATATACTTGTCAAAACAAACTCTAAATCCATGTTCTGAGTCACTACATAAAAGAAC AGCTTACAGTGTGCAGGTTTTGCAAATTCAAATATACCAGCTTCTCAAGAGGCAAGCCCCACTC CATAGCAAAAATCATAAGTGAACCAGAGGGTAAAACATACAGAATACACTAAATTCCTAAAGAT ACATACAACAACACACAGCTAATGCTCTTTCCAGATACATTAGCATCAACAAGGAACAATGATG GAGAATACACGCACGGCAGATTTGTTTAGTTAAGTGCACATGGTATGCCAAAAACTGGTAGAAG TTTCCATGTTTTTCATACCGTAACTTTCGTTTGTTTGCTAGTGCGGGTATTAATTTGCTCCAGA AGTGAGATGAGCCTTTCTTTAGACACCTGAAAGCCAGAAAATTCCCCCCAAAGAAAGTCAGCCT TCAGATAAATCGTTCTTCTGATTCTCTTGACACAGCAAAGAGTATGCTACCCGCCTCTATTACC TTTTCAGATATTCCACCAGACTGAGCAGCACTCAGAAGAACATGCTCCACCCCTCTTGCTTCAT CAGGTTTGACCAAAGCTATGCGGGAGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA024959_circ_g.1

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