Detail information of Os03g0833900_circ_g.1


General Information
CircRNA Name Os03g0833900_circ_g.1
ID in PlantcircBase osa_circ_022596
Alias Os_ciR1650
Organism Oryza sativa
Position chr3: 35042159-35043620  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0833900
Parent gene annotation Similar to Cytosine deaminase (EC 3.5.4.1). (Os03t0833900-02);Si
milar to Cytidine/deoxycytidylate deaminase family protein. (Os0
3t0833900-03)
Parent gene strand -
Alternative splicing Os03g0833900_circ_g.2
Support reads 7
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0833900-03:3
Os03t0833900-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTCAATCATGTCCATAAGATCAAATCTGGTAATAATACCTTCCTGATGACCAGCAAATGCTG
AAGCAACTGAGATCGTTCCGTCCTTGGATTCCACAAaattagtacatccgaaacttctccttag
tgttctcgaagacttgttcagcaatcagggctccattgccatctgcccgccttatctccaagtt
ggccttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTAGTACATCCGAAACTTCTCCTTAGTGTTCTCGAAGACTTGTTCAGCAATCAGGGCTCCAT
TGCCATCTGCCCGCCTTATCTCCAAGTTGGCCTTCTGGTAGTAAGCAGTTCCCCTCAAAGCATC
AGCAATGAAGTCATCGAATCCAATGGCAATAGCAGCTTCTGCCTTGGCTCCATACACCAGCCTC
TGCATTGCAGCATTGAAAAATATTGTTAATTAAGCAAAAGCTACATTCTTCCAGGTGAACCATA
ATAAGGTAAGGAACTAACCTTAATCCGTGATAGATGCACAGCGCCGAAACACATTGGGCAAGGT
TCACATGATGCATACATTTCACAGTCTGACAACTCAATTTTTCCAAGCTTTTTGCAAGCCTATA
GCACAGAAAAACATTTATTATGTGAAAAGATAACCAAACAATGGAAAGAAACTAATGTTAAATG
CATTATCGGCCCAAATTGGCTGGCAAAGAATACAATAGTCATACTGCTGCCAATCAGTGTCTCA
GTGAATTGTTCCTAATAAATAAGAGCTTGTTTTATTTTTTAAAGCATTTCTGTTGTTTTATCCG
CCAGCTTGAAATTATCTACTCCATTTACACCATCAGCCAAAGAAATTCTGAGAGTGCAAAACAA
AAACTAGGAATTTCTGTATTCACTCATGACCTTGTTTTACTGGAATCTAAACAATTTTTAGGCC
AATAAGATCTCTGTATTTTAAGTTACCACCTGCCAAAACATAGCTATTTACAGCACTTTTCTAT
AGTTAGAATTGAGTACCTCTGATGTTCTGATACAAAGGATGAAAGGAAAAGGACAAGCATACAC
CATCCTAGCTGTTGTAACTTGTGAAGATAACATCTAGTATATTTTTCAAGCTGCGGCACTAATA
TCAAAATGAAAAGGTGAATCTATTTGGCTGTCCAGTATATTTGCATTCTAGTTTTAAGTTAGAG
CGTGAATCAGGCACATTTAATCAGCAGAGATGAGGCCACTACTAAAGAATGCTAAGTATCAACG
AAATGTAAAGAGTAAACACCATGTAGCTGGTAGCCACAGTACACAGGGCAAGTTACCTCTCTTA
TTGCAGTTACTTCAGCATGCGCAGTTGGATCAGTGTAATCCAAAACCATGTTATGGCAACTAAC
TACTATCTCATCATTACGGACAACAACTGCACCAAATGGACCTCCATGGCCACAATCTACTCCT
TGGTAAGCTTCTTCAACTGCTTTAGACAAAAATTTGTGATCCCTGTCTTGTACGGCTGTTTAAT
GCATCAAAGATTAAATAAGTGAGTGTTTAACAGTCCTCCAATCAGCAGAAAATAACAGATGTTG
GACATATATAATATTCATTGGTCAATCATGTCCATAAGATCAAATCTGGTAATAATACCTTCCT
GATGACCAGCAAATGCTGAAGCAACTGAGATCGTTCCGTCCTTGGATTCCACAA
Conservation Information
Conserved circRNAs osi_circ_013850
PMCS 0.414416
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015