Detail information of Os05g0374000_circ_g.1


General Information
CircRNA Name Os05g0374000_circ_g.1
ID in PlantcircBase osa_circ_027680
Alias Os_ciR9845
Organism Oryza sativa
Position chr5: 18030973-18035592  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method find_circ
Parent gene Os05g0374000
Parent gene annotation Hypothetical protein. (Os05t0374000-01)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os05t0374000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGGAACTCATGCTGAGTGCTGTGGGAATTGACGACAGTAGCAAAAAGCAGCTATGGGTGGGG
CGATGATTGGCAAATAAATTTGACCATCAAAGGTGCctgtggttctattgaggcttgtgtgata
tttcttgggttagagagtggcaattctctgtcattccctgcaccacaaacagaaaaggagctgt
cagtttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGGTTCTATTGAGGCTTGTGTGATATTTCTTGGGTTAGAGAGTGGCAATTCTCTGTCATTC
CCTGCACCACAAACAGAAAAGGAGCTGTCAGTTTGCATATCCCAGTTCCCACTTAAGGACCAAG
AAACCCAAAGTATAACCAATCCTCCTTTTCAAGTCAACAAATAGGTCATGTGTTGATATGTTTG
ATAAAAAAATCTCTACCTTTCGTTTTCTTGGAAAAGATGTATACTCTTTTGATAGCTTATTGCG
TGTGCTCTCAAGGAAGAAGAGCACTACAGGAAGTCATTCCTTGATATTGATATTAGGTATGCCA
CTCATGGGTGGTATGCAGGCATGGCATCAGCTACATTTCTGCAGTCAAAGGTCAGAACAGGATG
TTATTTTGCCAAGAACTACGTAAATATAATTGACAGAGTGTGATGTTCCTGTAAATTTCTGGTT
GGTGGACAGGTCGGGTAGACATGGTATTATTTGTTGCAGTGTTCAACATTTTGGTTTATTCAAA
TGTACCCTTTAAAATGTACAATGCATCAATTCTGAATGGATAGTAATGCAAAGAGTCTACCAAT
TTGTTGTTCAGACCTTAGGGGATCTAGCTTTGCTAATTTCCTCCCCCCAATTCAAGTAACCACT
ATGTAGAACGAAAAAAAGTCTGAATATTGTGCATTATAAAAGGATACCAGAGCCGGCATCGTAA
TCAAAAATGGAAGAATTATACATGTTTTTGAATTTTGCACATGATACCTATAAAACTCAAATAA
ACACCATGCCTGAATCCCGATTGCTAATAATCGAAGTAAACAGCTGATATAACATAAGTTCACT
GGCGCATGTATCAAATTATTCACACAAGGACAATCTGTGACAAAAGTTAGGCATAAACTTATCC
CTAAAAAAGGTAAATACTTAGTTTTCCCGGTCCCCTCATTTCCACTTTGCTTTACAAAGTCTGT
CCAACCTAGGTTTCCTATGCTTGTGGATTTACCAGATATCTTCAGAACTGCAGCATAAACTGTT
GTCTAAGCTCCTAAGTGTAAAAAGCAGACATGCCAGAGCATTCAGTTTGTTTCACATATCTGTT
CACATTGCCTTCAGACAGATATGATCAGATACGAGAACACAATGATCCGTTGATTCCCATGGTA
GACTCTAACAGGCAGCAACTTGGAAAAAAATTACCCCGAGAACATGGCAGTGTTGTTTTGGATA
AACCTTAGGATGGCAACAGCATGCATGTGGGCAAAGGAATTCTACATTATCAAGCAAAAGTTTC
TGGTCACTAAAAAGGGACAAACATTTAAGTGATCCATGTCCATACAATTGAGCTAGCACAAAAT
ATCAAATTCCTGAACCACAAAATATTGAGAAAGAATTATATCATTGATGTATCAACTTGTCTAA
AAATGGCCAGACAGAAGCTTTGTTACCTGTTTATATGTTCTGCAAGAAATTGATCTTCATGCAG
TTGGAAAACAGGCCCCAACATCCGAAAAAGAAATATGGGAAGAAACTTAATCAGATATGCTTGA
GAGGAGGCTTGCCACTTGTAAATATGAAAGCACAGAGATAGCACTTTGGCTCATCCTCGCAAAG
ACCAACATGAATTTTTGCATGAGAAATCGAATTTGAGGGATCAAGCAGGCCTGCTCAGGAGCAA
CCAGGTTTGCCACTTGAATACCTGATATCACTTCTTTTTCCCTACATATGACTTCATCAGAATC
TCAATCCTTCTGAGATCCACACCAGATACACGCTCAAAACCCATCTCTGTTCACTGCACCTGCT
TGATCTCTTCTATGTCACTGTTCCTCTGAACAAGCTGTAGTGAAAGATATGTACTGTGATAGAC
TGAGTTTACTAAACGAATGCATCATTTTTTCCCTGCATCCAATCACTTACTGACAGATGCTGCA
CCATGCTTGAAACAGAAGCCAAGGAAGAAAGAACATTAGCATCTCAAATAGAGCCATCAACCAC
CGCAACATAGCTTCCTCCAAAAGAAACATGTATTCTTCCAAATTTTGTAAGCAGCACATCCTCA
CATGGGTTTCTAGTCTACCAAACAGTGCCCAATACCGGTTTGACCACGCCACTTCCTGCACCAG
TCCACATACATACCCTTCAAGGTTTTCCTTTAAATCTCCTTCTCTCCCTCCATCTCCACTCCCA
TCCCTCTGCTCTTGGCAGTGAACAACTGTCCTCCTGCACATTTTGTCTTCCTCTCAAAACATTG
CCACAGAATATTGTTCATTCTTGACACGTAGAAGAGCCATGAGGCCATCACTCTTGCAGTATCT
GAAGCTGCTCCTGTTACTTGCCCTTGGTGGTGTCACCACCATGCATGTGCCTAAACAAGATGTG
CCATCATCCCTGGAGGAACTCACCCTTGATGGCCATTTCAGCTTCCACGATGTGTCTGCTGCTG
CACAGGACTTTGGCAACCTGTCCAGCTTCCCGCCGGTTGCGGTGCTTCATCCTGGCTCAGTGGC
TGACATTGCCACAACCATCAGGCATGTGTTCTTGATGGGTGAGCACTCCACGCTCACAGTGGCA
GCCCGTGGACATGGGCACTCGCTGTATGGGCAGTCCCAGGCTGCTGAGGGAATCATCATCAGTA
TGGAATCCCTCCAGAGTAACACAATGAGGGTGAACCCTGGCGTATCACCCTATGTCGATGCTTC
AGGAGGAGAACTCTGGATAAATGTTTTGCATGAGACTCTGAAGTATGGTTTAGCACCAAAGTCG
TGGACGGACTATCTCCATCTCACGGTTGGAGGCACACTGTCGAATGCAGGAGTCAGTGGGCAGA
CCTTCCGGCATGGCCCACAGATCAGCAATGTCAACGAGCTGGAAATTGTGACTGGTATGAGAGA
GACCTATATAGCATGACGATTTGAACAATTTAATGTAACTAACTCTCTATAATGACTGGCAAAT
GCAGGAAGAGGTGATGTTATCACATGCTCACCTGAACAAAACTCTGATCTCTTCCATGCTGCCC
TTGGTGGCCTAGGTCAGTTTGGCGTCATCACAAGAGCCAGGATTCCTCTTGAACCTGCTCCAAA
AATGGTAAGCGAAACAATTAAGTCATGTCAGCTTGATGATATTAGCATTTCAATAGCATACTCA
TGAGTTAATCAGATGGATGACAGGTAAGGTGGCTACGAGTTCTCTACTTGGATTTCACAAGCTT
CACCGAAGACCAGGAAATGCTCATTTCAGCAGAGAAGACATTTGACTACATCGAGGGCTTTGTC
ATCATAAATAGGACAGGCATCCTGAACAACTGGAGGTCGTCCTTCAATCCGCAGGACCCAGTGC
GTTCTAGCCAGTTTGAATCAGATGGAAAAGTGCTCTTCTGCCTTGAGATGACAAAGAACTTCAA
CCCTGACGAGGCTGATGTCATGGAACAGGTGAGCCAACCATTACCCTTATGTCACTAAAGATGT
TTATAAACCAAGTAAAATGAGGTCAAGTTTGAGTGGTTGAATTCTGTATGTATATATGTTTACA
GGAGGTCAACACACTGCTGTCTCAACTTAGATATATGCCTTCCTCCTTATTCCACACGGATGTA
ACATACATAGAGTTCTTGGATAGGGTACACTCTTCTGAGATGAAGTTGAGAGCTAAGGGCATGT
GGGAAGTCCCACACCCATGGCTTAATATCATCATTCCAAGAAGCATGATCCATAAATTTGCGAA
GGAGGTCTTTGGGAAAATCCTGAAAGACAGTAACAATGGTCCCATATTACTCTATCCAGTGAAC
AAATCCAGGTAACAAGCTTTGTCTCTGAATCACAGATACCATGGAGATGCATCATTAAGTGAAT
AACCATTCTTGTTAATCATTTCATGCAGATGGGACAACAGAACATCAGTAGTCATACCAGATGA
GGAAGTTTTCTACCTGGTGGCATTCCTATCCTCAGCACTTGGCCCCCATAACATCAAACATACA
TTGGACCTGAACTACAGGATAATAGAGTTCTCTGACAAGGCAGGTATTGGAGTGAAGCAGTATC
TCCCAAACTATACCACAGAACAGGAGTGGCAGTCCCATTTTGGTGCAAGGTGGGACACATTTCA
ACAGAGGAAAAAAGCCTATGACCCCTTGGCCATCTTAGCTCCAGGACAAAGAATATTTCAAAAG
GCATCAGCGTCACTACCCTTGCCCTCATGACAGTATCTAATGTAAATATTTATTTCCTGGGAGC
AAACGTTTGTAGTTTGTACAGAACTGTAGGTAAAATTTCTTTTACAAAAGGCAATTAACTGTAG
CATGGGCAACACAGTTTACTAACTACTGAATATCAGCAGTGAACTAGTGGTGCACTCATGAACA
TTCTCATCAAGAAGATTAAAGGAGAGCAGCATTGCCTTACTTCCAATTTTCTATGAAGCTCTTT
GGAAGCAATAATTTGAGCATTGTACCAATCCAAGCAAAATGAGAATTCCAGCAGTACTTACAGC
AGAAAGATAAGCTGTGCAATGATGAACTGAACCACTAACAAGAGGAACTCATGCTGAGTGCTGT
GGGAATTGACGACAGTAGCAAAAAGCAGCTATGGGTGGGGCGATGATTGGCAAATAAATTTGAC
CATCAAAGGTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.260811416
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015