Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08220_circ_g.5 |
ID in PlantcircBase | ath_circ_001310 |
Alias | At_ciR5150, AT1G08220_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 2582370-2583038 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ, CIRI2 |
Parent gene | AT1G08220 |
Parent gene annotation |
ATPase complex subunit |
Parent gene strand | - |
Alternative splicing | AT1G08220_circ_g.2 AT1G08220_circ_g.3 AT1G08220_circ_g.4 |
Support reads | 2/2 |
Tissues | leaf/aerial, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G08220.2:3 AT1G08220.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.272671237 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2582851-2582372(-) |
Potential amino acid sequence |
MNRGYFADMKEFKEHGGKIAAANKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVDTESL VVPKVSLVCLSFRASSQFGNKKAIEDERARLNDEMNRGYFADMKEFKEHGGKIAAANKTIIPAA SAIKFPVLAVTFSNGKSLKLPIAPNSNEVDTESLVVPKVSLVCLSFRASSQFGNKKAIEDERAR LNDEMNRGYFADMKEFKEHGGKIAAANKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVD TESLVVPKVSLVCLSFRASSQFGNKKAIEDERARLNDEMNRGYFADMKEFKEHGGKIAAANKTI IPAASAIKFPVLAVTFSNGKSLKLPIAPNSNEVDTESLVVPKVSLVCLSFRASSQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Zhang et al., 2019 |