Detail information of BGIOSGA029086_circ_igg.1


General Information
CircRNA Name BGIOSGA029086_circ_igg.1
ID in PlantcircBase osi_circ_018121
Alias Chr08:28309119_28310771(MH63RS2), Chr08:28767457_28769109(ZS97RS2), Chr08:28309119_28310771(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 28782136-28783806  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACAAACTTCAACGATGGCGCCCTCACATACCGCTGGATTTGCATTTGCAGAAGACTATTTGAA
CGCCCAAGGAATGAGATGGGTAGATTGGAACTGTTGgctgcgaaatttaaatgccaaagcattc
ttggagttgatattgattcaggtttgttaactaatgtttcatgtctttcctaggcaaacatatt
gttataaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGCGAAATTTAAATGCCAAAGCATTCTTGGAGTTGATATTGATTCAGGTTTGTTAACTAATG
TTTCATGTCTTTCCTAGGCAAACATATTGTTATAAATTTTGTAAAGCTATTTTCTTGCTATACT
GATCCTGATCTTGTCCTGTTAGGTTTGATCGAAACTGCCAACTGGAATTTAAGAAGGATGTCTC
GACTGGATAAGGTGGTTGTAGAAAACACCAAGGCTCACAAGTCATCAGATTCACCGTCTGAAAG
CTGTCCGGAAAAAGTGGCACCTGAGATATCAAATGGGGATATTTCTAATGGCAGTCATCATGAT
ATTTTTAAAGTTGTTTCTTTTCGTCGCGAGAATTTTGTGGACAGCATGTGTACAAGTTCAGAAC
AGTATGATACAATTGTTTGGTAAGTTACAAATTATAATATAGATCTCATAGATTTTCTGCTGTC
ATTAATAATAGTCACTTTGTCGTTTTTATATTGCAACATATTTGTGAAAATTGCCATCATTACC
CACATTGGATGTCATATTGACACATGCGTTTTTATATGCTTTTATTCTCATGCAGTTTGAGTGT
GACCAAATGGATCCACCTGAACTGGGGTGACGATGGCATAATTACTTTATTTGTGAAGATCTGG
AGACTTCTAAGACCAGTATCTATCTGTCTTTATGTTTCCTGTGCTTTGGTAAATTAGATGTCAA
TGATAAGATGAAAAAAAATAATAAACTATTTTCCCACTGGATTCTCTTGTTTTTCAGGGTGGAG
TTTTTATTATGGAGCCTCAACCTTGGACCTCATATAGGAGAAACAGATTGGTTTCAGAGGTATC
ATTTTCCCCAATGCCATACTGATCTCTGACACCCAGTTGATTATTTTCTGGATCGCGTTGAAGT
TTGAAATGCTTATTGTGTTTCTATGTCAGTTGTTGAAGGCTAGAGTTATTTTACTTTCAGCCCC
TTGCTTGTGTAAAAGCTACAGTTGCGGTTGTGGTTTTAGCTGCTTGCTTGGCATTATCGTCAGT
ATGTTGGGGCCTCACTCTTACTGGACCTGCTTTCTTAACCCCCTGTTATTTCAATCTTAAGATT
ACTAGAATGAACATACTGGCAGAAATCTTAGTCCTCATTAAACATTTGATTCTTCCATGACCGC
AGTTTTTTTTTATCGTGCAAAGTTGCAATACCTCACTCTTTTTTGTGTTACATCTTTCAGGTTG
CCAAAGAGAACTTCAATACCATCCTAATACATCCAGATAAATTCCGGGAGATACTTCTAGACAA
GGTATGTTCTAATGTCAGCCACGAATTCTATGTTCAGTTCTTGGCCCCAGCAACAGAATTTTTG
CCTCACCATGCATTGTTCCTTGCAGATCGGATTCAGGTCGGTAGAGGTGGTTACGGACAAACTG
GAGGGCGCTGTTACTGGTTTTGACCGCCCAATCGAAGTTTACCACAAAGTGATGGGAACTGGAT
CAAGTTCTTGACATTTCCTGCCAAAGGCATATGTGGTGCTTCAGATGTGCAGCTTGTTTTAGTG
GGATTCATTGAGCTCCATGACGCTTTCTTCCATTCGACAAACTTCAACGATGGCGCCCTCACAT
ACCGCTGGATTTGCATTTGCAGAAGACTATTTGAACGCCCAAGGAATGAGATGGGTAGATTGGA
ACTGTTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021