Detail information of BGIOSGA001977_circ_g.2


General Information
CircRNA Name BGIOSGA001977_circ_g.2
ID in PlantcircBase osi_circ_011475
Alias Chr01:8401035_8401596(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 9259552-9260113  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA001977
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001977_circ_g.1 BGIOSGA001977_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA001977-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCATGGAACTGCATCCTCAGGATTGGTATCTGCTGTATCATTTTGCATGACAAGACCACTGTT
TGGTTGCCAATGTTGTGGCACTACATTGGCTGTGGCcctgtgcatcagcccctgaagacacaag
tatttgtaggttgtttgagaaggccaaaccagttatcctcctttgatgccctttcaatctagtt
ttgacctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGCATCAGCCCCTGAAGACACAAGTATTTGTAGGTTGTTTGAGAAGGCCAAACCAGTTAT
CCTCCTTTGATGCCCTTTCAATCTAGTTTTGACCTGGAAAGAAAATAAAGCTCAATATAAATGA
ATAGCAATGGCTCAATAAATTACAGTATGTGCAAATTTTATGTATGCAGTACCTCATCTACCCT
GACATTGTATATATGGATGGTTGAATCTTCCATTCCAATTGCTATGATATTATTGTCTTGAGGG
TGAAATGCTAAAAAGGTTGATGCTGGAGGTGGTGGCATGAATGTTGTCATCACCTGCATGAAGG
AAGCATAATTAAAATTTCCTGAATTTTGAAGTATTTATCCAAAAAAGATATTGAGCATTTACCT
TAAATGTCATCATGTTAAACAGTGAAACCTTCCCACCACATGCAGACATCACATAAGAATCATT
CTTGGAGAGAGCAATGCATGGAACTGCATCCTCAGGATTGGTATCTGCTGTATCATTTTGCATG
ACAAGACCACTGTTTGGTTGCCAATGTTGTGGCACTACATTGGCTGTGGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021