Detail information of BGIOSGA021448_circ_igg.1


General Information
CircRNA Name BGIOSGA021448_circ_igg.1
ID in PlantcircBase osi_circ_016089
Alias Chr06:9524275_9529835(MH63RS2), Chr06:9543633_9549193(ZS97RS2), Chr06:9524275_9529835(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 10805588-10810248  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021450_circ_ag.1 BGIOSGA021448_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTATGCTGGTCGGCCTTATGGCTTCATGCGCTTCTTGAGCATTTTTCACCTTCTTGAAGTAT
TTTCTAATGCCCTCTGAAGCATATTCCTCACCATACagcagaagcacaagcagaaagacattgt
aaggtgatgtttgggctctattcaattcatataattgctagctagaatgctagatgccacataa
atgcacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCAGAAGCACAAGCAGAAAGACATTGTAAGGTGATGTTTGGGCTCTATTCAATTCATATAATT
GCTAGCTAGAATGCTAGATGCCACATAAATGCACCATTGCCTACTATAACAACATGATTGGGGA
TTGAAGTTTGAACAGTTTAACTATTGAAGTTTAGAAAACTTGACAAGTTTAGGGGCTAATATGT
AATTTCCTTACAAAAATTACACTTCTGCGTAATGGATTATATGATATAAGGACATATTGTCTTT
ATTTAAACCAATATAATGAAAAATAAATGTGATAAGGATTATAGATTTATTGCCAAATAAGGCT
AAAAGGAAGGTTAACATCAGGAACTATACCATCCGACCACGAAATTCAGGGTGTAGAACCCGAC
TTTTTATTGTCACATATTTACGATCCTGAAAAGCAACAGGTAAACACTGTTATCCATGTGGCTT
GAATCATTGCTAATTATAATAATGATGCAAGATCCTGGAACTTTGCAACTGTTTATTTTGTCCA
TGTGTTCTACAAAAACACAAAATAATTTTCATCATCTTACAAATAGCAAAGTAGGCCTGCTTGA
TCCATTGCTAACATTTGACCCCAATAAAAGACAAACATTTCTGCATGTACACTTCACAAAATCT
GTATGTTTGCTAACTTGCCCAGGGATGGGATGGGATGGGATTGGATCCCATTCAATCCCTGTCA
ATCCAAGTTGGATGATGGATTCTTGGGGCTGAGATGTTTCCTTAGCCTTACCTTATTTACGGCC
ATATATTAGATGACCTAGCACCCATGTAACACCTTAGCTACAGTACCTCCTTGATTTCTAGATT
CAGATCTTATCTTATGTTACAATGAACTCTAAAGCCCGATCAACAATTTACATGGCAGTGAACT
ACAATTGACATCAACATTCCAGTCCCAGAGCTTAATGCCCAGGATGACCAACATATAAACTGAC
CCCAATACCCCATGTTAGAGACCATGAAAAAAAAAAAACTTCCACTGGATTCGAAAGGTCCAGG
GTGATGTACGTCCATTAAAGTCCTACAGTTACCAGATGGTCTGTATTGCATTTCATGGTTTATG
CATCACTACAGGAGTAGCTACATGAGCAACCCAGAAAAAACATGCTGTATGCGCATATTAGTGT
GTTCAATGAGATATAGTTCTGGAGATAACAGAGTAGATCTTAGCAATATGGCACCTGCAATACT
TTCATTATAGATGCATATGTGGATGGCCTTCCAATTCCAAGTTCTTCTAGCTTTTTAATCTGCA
AATACCAAGGAAAAAATGATACATTCTTAAATATATCTGATAAAAAGGAAATATATTTCTATAC
CAAGCATGGAAATGCCCAGAATGAACAGATAAAAAACCAACATATAGGTTATTACTGACCAATG
CACTCTCAGAATAACGTGATGGAGGTTTAGTAAAGTGCTGTGAAAGATGAACGTTAACTGGAGA
CACCAAGTCCTTAACCTGAGAAAAAGAAATGCAACAGTAACATGCTTATATAGTTGAAAGACAG
ACAACAGTGCACATTAGCATAAAAAATAGGTCATATAGGAAGTGCATAGTTCAGGTAATTTGAC
AGCTGCTGACCTCTAATTTGGACAAGGCCTCAAAGTTATCCTGGTGAACAGCATCAACCTCAGA
ATTGTAACTGGAAGGACTTGCTTCAGTGTCCTAAAAGGATAGCAAATTTTCCCGTTACTGAGTT
AAGCAAGCTAAACTGAACACTAGGCACAGAGTTCTTAATAGAAACGTAAGTACTGATCATTAGA
TCTCCAAAGGTAACATATTTTCTTAATAGAATATTAAACATAATGATAATCAGGACAGATCCAT
GCATCTCAGTGAAGATAGAATGCTCAAATAGAAGCTCTCTAGATAATTAAAATGGAGGTAGCAC
CATGGCACAATCTCGTATGTTCTACAAAATTGGCAATTTCATGTATCAATTACTCATAATAGAA
TTAGGATTTAGGAAACATAAAAATGGCAGAATCAAAAGAAAATATAGGATCACCTAGTCAGATA
CTCAGATGTGTGTATCCAATTCTAGCTTAGCAGCGCATATGACAGATAATATAACTCTTTTTTT
AAAAAAAGAAAAAACTAGGGTCCACATCAGCCTAAGCCTAGGACTTATCCAAGTTGTCCCAGGA
TGTCACATGGTCCATATAGGCATACATATAAAAAGAAACAATACTGCAAATATGGTAAAGTCAT
CTAGCAATGATGTAATCATCCCTTGCACAATGACACAATATGGTCAATATATCATTCAATAGAT
GGAACATACCATGAAGCCACTGATGCACTGAGAGAAATAGCTTAAAAGAGTGGAAGGCCACAGT
AAAAGAATTCAACATATTTCCTTATAAAGTTGAGGCAGGATAAAGCCAAACCTAGGCAAAGACA
AGTAAACTATACAGGATTTTCTGAATGTACACAGGATGTGACAAGCATGGATAGAAAAAGTCTA
CAACTTACATCATATACAGCTTGGTATCCCTTGAAGTCAAGCCTTGATGCAGATGAATGAAAAA
TCATGTCTCCTTCAGAATTACCAATATCAACTTGAATCTACAATACAATTATAAGAGGTCATAC
TCTAAACATGAACTTTGATTGAATCTTTTAGATATTGAAAAACTGCATACATCCACACCAAAAG
ATATCCAGAGAATTTGGCATAATACATGCTAGGGAAAATGGATCCCACTTCTGTATTACAACAC
CAACATATTATATTTAGCACAAAGGCATGCCCTGCCACTGTATCTGGCCTCTTCGAAGTGCTTG
TCAGCAGTTCATAAAGCAAATTGGCTATTATTAAATAGAAGACCAATTACTCATAAGAAATATG
GATACATTCAACCAGAATTATGCAAAGCTTAGTCACAGAAATGAAACACTCATCTATGAAAGGA
ATAAATTTGCTTGGTTACCAATGTTTTTTATTTGATGACATGTCTTTGTGAAACAATTAGGATA
GAACCCAAAAGAAGAATTCATACATTCACGAATACTTGACACATTTTGACAATTTATATTAGTC
GCAGAAGCTTACAGCTTCTCCAATCAACTGTTTCTTGGGTGGAATTTCGTAGAGTAGCCTACTA
TATATAATACCACCCAATTTACTTCATTGTTTTCTTCTTCTTGAGGAATCATTAGGTGATTGAA
TGCATTTGGTCAAATAAATCTAAACCATGCTTTCTATAGTAAGAAAACAATCCATAATCAGAAA
AGCAACATGTAAAAGGAACATCAGTAGTAAATAGCCGTAGATAAAATGAGGGGAAAGTGCAAAC
CATATCAGTTCTAGAAGCTTCCATCTGGCAAGCCATAGTTCTTTTCCATATTAGAGTATACAGT
TTCAAAGAATCATCATCAAGTGCTCCGACCAAAGATGCTGTAAGGGATTTTACAACACAACTAT
GTCAAAAGACAGAAACTTATACAAAGAACTAAAGTCTGCAGAATTCAAACAAGACCAAAGTTTA
TTTTTGGCAACCCATAATAACTTTGTAAATTAACAAAATTCATCCTTCAGGCACTTTTTTAATC
GTACAGAAGATGCCGACCTCGGGTGAAAATATATTTCCAGCAAATGGAAAAACATTTCTCCCTA
AATGAAGCAAAGATGGTCTAAAGTGCAAAATTTAGTAAAACTGTATATGAGGCTGTTTGTAAAA
CAAGCAAGGAAATGTTAGATGTTGAATAGTGGGAGACATAGTACTGCAAAGAACAGTTCTATTA
TGCACTAAATTATACAATACACTTTTAACAGACAACAATTAAAACATTCATACACCACATACCA
AAGAAAATATTAGTTATGTTGATATGTTTAAGTGCGATATGCACAAATTCATAAAAGCTTTACT
GCCAGCTATACCATCAAACATACCAATTTGAAAGATAAACATGAAACATGTATATTGGTACAAA
GCAAAATGGTAGTTTGTTGATCTTTTAAGTCTGATGTGCACTAACTTATATAAGTTCTATTCAT
ATTTCTAATTTTTCAACAGGTTGCTAGTACGATCTATGTAGTAGAGTAGTAGGCATTTGTTACT
TCCCTGAAAGTACATCAAAATATTGTAACTACTGAAAGTCATTCAAACAATTAAAAATCCAAGA
AGGACAAATAAGTAAGAAAAGCACAATACTTCAAATTTTCTGTATACTAACATTTAGTGTGACA
TTCAAAGTTTTCGACAGGAAGTGACGAAATATTGGCCACCTATGAAATCTGGAAAATTAGAGGC
GACTAGTACATAAGAGATCTCCAATACCCTTTTTTATAACCATGTTTGGTACACAACAAATTTG
GTCATTTATATACAATAATTAATTAAATATTTACATTGTGATCTCCACAAGGCAATAGGTATAT
ACTAAATCAAGTCTGAAACCAAATGAAGTTGCTGGATTTTTTTTAGATAATGAAATGAAGTTGC
TAGATGTAATGCAGCATCTGTAATCAATAGAACGCAATAATTTGTAAAGAAGTGCAGGTAGATT
TCATTACATGGCAACCTCCTTATGCTGGTCGGCCTTATGGCTTCATGCGCTTCTTGAGCATTTT
TCACCTTCTTGAAGTATTTTCTAATGCCCTCTGAAGCATATTCCTCACCATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021