Plant Circular RNA Database

Detail information of GLYMA_19G034600_circ_g.1

			
						 General Information
					
						CircRNA Name
						GLYMA_19G034600_circ_g.1
					
						ID in PlantcircBase
						gma_circ_007597
					
						Alias
						gma-circRNA2627
					
						Organism
						
							Glycine max						
					
						Position
						
							chr19: 4541738-4545842  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							GLYMA_19G034600						
					
						Parent gene annotation
						
							hypothetical protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						flower bud
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						KRG93701:6

General Information
CircRNA Name	GLYMA_19G034600_circ_g.1
ID in PlantcircBase	gma_circ_007597
Alias	gma-circRNA2627
Organism	Glycine max
Position	chr19: 4541738-4545842 JBrowse»
Reference genome	v2.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	GLYMA_19G034600
Parent gene annotation	hypothetical protein
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	flower bud
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	KRG93701:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGTGGTTGAACGTCCACACTGCGGACCAGAAACCTTAGGTCTAACTTGTCCTCCAGAGCTACA
ACGACAGCAAAGAGTATTTCCTTCTTTAACACTCTGcatggaaaacgtcctggaacgatatgag
agacatactcatatagggaaacttgttggagatggtgatgaatcacaggtatctcttcagtcct
agctttac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATGGAAAACGTCCTGGAACGATATGAGAGACATACTCATATAGGGAAACTTGTTGGAGATGGT
GATGAATCACAGGTATCTCTTCAGTCCTAGCTTTACTAATATCTATGCCAACTTAATAATGCAT
CACCAAAGACCATTTAATGATGAACTAAAATCTCGTTCACTACTAGGCCATGAATTTCCCTCTA
AACCTCCAATCAATGTACCAAAACAAAGTGAGGGCCAGCAATTCAATGAAAACAAAGAAAAAGG
ACTTGATTCCTATTACATACATGGTGAATGTGAAATACTAATGCCAAAAATTTTATATGTATTC
ACACTTCATAGAAACTTTATAAATAGATTTATTTTTTCACTCAGTGAAGGAGCAGAAACAAACA
GAATCTCAGCTAAAAAAACCATTCGTCTTATATACTTCTGGTGATATTAAAAAGCAAAGTGTCA
AAAAAATTGATAAAAACGATATAAATAACACTAACAGAATATTTGGCTTTACGTCATTTTTTGA
TGGACGTGCATATTTGACTCAGAAGCTACATTTTGTAGGGTTGGATGCACGTCAATATGTAATG
AATAAGTTTCCAAACAAGTACTAAGAGTATGAAAAAAAAGTGTTCTAAATTACACAAAAATAGC
AATTAAATATCAAAAAATTTATGATTATTGGTTTTCAAAAATAGGCTCAAGTTAGTTCCAAGCT
AGTGTTCGTTTATATATACATATTCTCATATCAATAGCAATTAAATATCATTTTATTGTAGGGA
AACTGGTCCTTACAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAACTTGAGGT
ATACTTGATATTTCAATATAAACATAACAATTACTTTAATTTGAGCTATGTTGGTTGCACAACA
GAGAATTATAACTTTCACCCGATATAGATGGTTTTGTCGACAGTTTTCTTTGGCCATAAAAAAT
GTGTTTGAGGGTGTGTTTTATTGAACACAAGTGCACATCACATGGCTGGGTTTAGGATAAATTA
TTATATGGTTTAAGATTGTTAGGTGTCCATGGCCAGTTTTCTGAAGTGATATAATCAAAATTTT
CAATTTACAAGACCATGTAATAATATTTAGTAATTTCTCTGGTTTTAGATGCTTCAAAACCATT
TATTTTTATGTAATTTAATAATTAGAATTAGCTTATAATTAACATGTTCAAATATAGGAACTTT
GTGGGAGAAGATCTGGATCCCTTAAACTTGAGAGAGCTTCAGAGTCTAGAGCATCAGCTTGAGA
CAGCTATAAAGCGCATCCGAACTAGAAAGGTGAAAGATTAATGCGTTATCATTTGGGATAATAC
TTATCATACATATACATTTTGTTCCATATATCTAACTACTCCAATATCACTTTTTTCTTTATCT
TTCTAATTTTTCTATTAAATCACCTACATTTCTATCAATTTCTTTCTTTACTTTTTTTTCTTTT
CTCTCTATGTCTCTCATATTTCTCCAATCTACCCTAAAATGGATTGGATGAATATCACTACTCT
ACCATTTGCAAGAAATAAGAAAAAAAAAACAAACGGAGAAAATGCATTCTGAAAATTAAATTAG
AATTAGCATATATAACATTTTTTTCCAGGTAATCTTCAATTGACCGATCATTATGATTCCTGCA
GAACCAAGTTATGAATGAATCCATCTCAGATCTGCAGAAAAAGGTAACGGGTTGGGGACTGGGG
GATTTCCTATTGGATATTGGCGTGTGCAATACATTGCAATATAGATACATATAGGCACATTAAC
ATTAAACAGCATCGGAATCATAAATAACTATATGCATGCAGATAACTAGATATTGTTCATGTAT
TTGCGCATTAATGTTGTGTATGTGTAGATTTTAAATATTAATAAAACTTTTATATATCTATATA
CTTGTGCTATTACTTACTATCCGTTCTATAATAATGATGAAAAAATTTAACCTAAAATAATTAT
TATTTTAATTTTTTAATGTAACATTAATTATTATTTTTTATTTATATTTTTCATATTATATGTA
GTATTAATGATATGGATTATAAAAATTAAGAATGATTTAATGGTAATAAGGTTAATTTTGTAAA
ATTGATATCTTATTTATTTATTTATTTATTTTTCTTGATGTTTATAAAATAATTTAGGATAAAA
ATTATAATGGGACGAAAGAAGTAGTAAATTAATAAATTTTTTTGCCTTATAAATATAGATAAAA
CCTAGACAGTTCCTTATATCTTTTTAGTAGTGTTCTCTAATCATAATTCAAATTTTACTTCAGT
AATCTGCTATATTAAAGTTTGCATTAAAGGTTAACATGAATTATTGAGATGAAACTTCATTTTT
GGAGAACAATACCAAAAATATATTAAGAAACTGTATTTAATTTTTTTAAAATATTTGTTCTTGT
ATTTGTAAGTGCATTAATTAATTGTATATTGAGAGATGGTTGAGAAAGGGAATGCTGAACTGAG
ATAGCAAGAGATTTAATGATGCTTCATTTTTTGTTAACATCAAGTCTAACTAAGAAGCCAGAAA
ATGATTTCTACTCTTTCTTTACCATAATCTTAATAGCTAAAAATTTCCTTATGGCAGTGCATTT
CTAGGGTCGTCTAAATGTAAAGGAGAAAATGGTTGATCATACAAATTTATTTTATTTCTTGGAT
CATGATTTTCTTGAAGTATATATATTTCTTTAAGTTGGTTGGAGGCTACAAACGATTTTGTTAA
TTTGAGTAAAGTTCTTGTTGGAAGAAATGTAAACTTACCCCCTATTTTACCTATTTTAGAGTGT
ATTAAAGTAGAAAGAAGAAAGAAAGAAAAAATAGAGAGAAAAAACTATAGATATAGTGAGGATA
AAAAGAAAAAGATAGGAAGAAAATGAACTTGAAAAATTTGAAGAGAAAGCGGTCAAATATCGAA
TTTCGTAGGGTTGTTTTTAATTATTATATCCTATAAGCAAGCTGGTACGTAGGTACGATATACA
ATATGACATTGAGTTTCATGTGAACTGACGTTAAGGTCACATCTTCAAAGACATATGTACTAGT
TTGATTTGAACTTCAACTTATGGCATAATTTCATAAAGTTTGTTTTCTACTTTGATTCTTTGAC
TTTATTTTGATACTAAAGTTTGTTAAATTAATTTCTGCCTGTGATCGAAGTGCAGTTAGTTTCC
TTTGATTGCAAGATTTATGTAGAAATACAATTAGGAACAAAATATTTCTGCCAAAAAAGGGAAT
AAAAATATAAATTTCTGGTGTTGTAAAAAAGATTAAATTAAAAATCAATTTGCTCCCTCCACCT
AATTAAAACTATTTCTCATTTTAGTTAAGTGGTTACATGAAAAGATGTTGACAAATTGATGTCA
GCCGTGCGCTTGTCAAAGTTACAGCAATATTATATTTGGTGTCTATCAATCTATAAAAAAAATG
TCTAGATTTTTTGTTTTTGCCCTTTGTCAAAGTTATAATGGTTTGTAGATTCAATTCTCATACT
TGGTACCATTTTTCGTTTGTTCATACATAAAATTTACACTTCACTTTAGTCCATATATAGGTAA
AATATTCTACATTTTTATACATTAATTTTTTTTGTTTTGATAAAGAAAAATCTAACTCTGATAT
GACTTTAATTAATAAGTGGTAGGGATTAATTTGTAAACAATTGTTCAAGTGGAGATCAAAATGT
GAAGTTTATTTATGTAGGGAATAAAATGGAAAACAATGTTAGGTTATTGGATAGTGACTAAATT
CATACTTTAAAGTTTAATCTATAAAAATACCTCTATCTATATAAATCTTCGGTCTTCATGTGAC
AGGCAAGGCAATTGCAAGAGCAAAATGGCATCCTTACAAAGAAGGTAGAAGCCACATGTGCCTC
TCTAATCTATCAGTCTTCTAGACAACAAAGGATAAGGAAAAAAGAATAAAATATAATTAACTTT
TGTTACATTTGTAAATAGATTAAGGAGAAAGGGAAGGAAGTGGTTGAACGTCCACACTGCGGAC
CAGAAACCTTAGGTCTAACTTGTCCTCCAGAGCTACAACGACAGCAAAGAGTATTTCCTTCTTT
AACACTCTG
						
					

			
		

Sequences
Splice junction sequence	AAGTGGTTGAACGTCCACACTGCGGACCAGAAACCTTAGGTCTAACTTGTCCTCCAGAGCTACA ACGACAGCAAAGAGTATTTCCTTCTTTAACACTCTGcatggaaaacgtcctggaacgatatgag agacatactcatatagggaaacttgttggagatggtgatgaatcacaggtatctcttcagtcct agctttac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATGGAAAACGTCCTGGAACGATATGAGAGACATACTCATATAGGGAAACTTGTTGGAGATGGT GATGAATCACAGGTATCTCTTCAGTCCTAGCTTTACTAATATCTATGCCAACTTAATAATGCAT CACCAAAGACCATTTAATGATGAACTAAAATCTCGTTCACTACTAGGCCATGAATTTCCCTCTA AACCTCCAATCAATGTACCAAAACAAAGTGAGGGCCAGCAATTCAATGAAAACAAAGAAAAAGG ACTTGATTCCTATTACATACATGGTGAATGTGAAATACTAATGCCAAAAATTTTATATGTATTC ACACTTCATAGAAACTTTATAAATAGATTTATTTTTTCACTCAGTGAAGGAGCAGAAACAAACA GAATCTCAGCTAAAAAAACCATTCGTCTTATATACTTCTGGTGATATTAAAAAGCAAAGTGTCA AAAAAATTGATAAAAACGATATAAATAACACTAACAGAATATTTGGCTTTACGTCATTTTTTGA TGGACGTGCATATTTGACTCAGAAGCTACATTTTGTAGGGTTGGATGCACGTCAATATGTAATG AATAAGTTTCCAAACAAGTACTAAGAGTATGAAAAAAAAGTGTTCTAAATTACACAAAAATAGC AATTAAATATCAAAAAATTTATGATTATTGGTTTTCAAAAATAGGCTCAAGTTAGTTCCAAGCT AGTGTTCGTTTATATATACATATTCTCATATCAATAGCAATTAAATATCATTTTATTGTAGGGA AACTGGTCCTTACAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAACTTGAGGT ATACTTGATATTTCAATATAAACATAACAATTACTTTAATTTGAGCTATGTTGGTTGCACAACA GAGAATTATAACTTTCACCCGATATAGATGGTTTTGTCGACAGTTTTCTTTGGCCATAAAAAAT GTGTTTGAGGGTGTGTTTTATTGAACACAAGTGCACATCACATGGCTGGGTTTAGGATAAATTA TTATATGGTTTAAGATTGTTAGGTGTCCATGGCCAGTTTTCTGAAGTGATATAATCAAAATTTT CAATTTACAAGACCATGTAATAATATTTAGTAATTTCTCTGGTTTTAGATGCTTCAAAACCATT TATTTTTATGTAATTTAATAATTAGAATTAGCTTATAATTAACATGTTCAAATATAGGAACTTT GTGGGAGAAGATCTGGATCCCTTAAACTTGAGAGAGCTTCAGAGTCTAGAGCATCAGCTTGAGA CAGCTATAAAGCGCATCCGAACTAGAAAGGTGAAAGATTAATGCGTTATCATTTGGGATAATAC TTATCATACATATACATTTTGTTCCATATATCTAACTACTCCAATATCACTTTTTTCTTTATCT TTCTAATTTTTCTATTAAATCACCTACATTTCTATCAATTTCTTTCTTTACTTTTTTTTCTTTT CTCTCTATGTCTCTCATATTTCTCCAATCTACCCTAAAATGGATTGGATGAATATCACTACTCT ACCATTTGCAAGAAATAAGAAAAAAAAAACAAACGGAGAAAATGCATTCTGAAAATTAAATTAG AATTAGCATATATAACATTTTTTTCCAGGTAATCTTCAATTGACCGATCATTATGATTCCTGCA GAACCAAGTTATGAATGAATCCATCTCAGATCTGCAGAAAAAGGTAACGGGTTGGGGACTGGGG GATTTCCTATTGGATATTGGCGTGTGCAATACATTGCAATATAGATACATATAGGCACATTAAC ATTAAACAGCATCGGAATCATAAATAACTATATGCATGCAGATAACTAGATATTGTTCATGTAT TTGCGCATTAATGTTGTGTATGTGTAGATTTTAAATATTAATAAAACTTTTATATATCTATATA CTTGTGCTATTACTTACTATCCGTTCTATAATAATGATGAAAAAATTTAACCTAAAATAATTAT TATTTTAATTTTTTAATGTAACATTAATTATTATTTTTTATTTATATTTTTCATATTATATGTA GTATTAATGATATGGATTATAAAAATTAAGAATGATTTAATGGTAATAAGGTTAATTTTGTAAA ATTGATATCTTATTTATTTATTTATTTATTTTTCTTGATGTTTATAAAATAATTTAGGATAAAA ATTATAATGGGACGAAAGAAGTAGTAAATTAATAAATTTTTTTGCCTTATAAATATAGATAAAA CCTAGACAGTTCCTTATATCTTTTTAGTAGTGTTCTCTAATCATAATTCAAATTTTACTTCAGT AATCTGCTATATTAAAGTTTGCATTAAAGGTTAACATGAATTATTGAGATGAAACTTCATTTTT GGAGAACAATACCAAAAATATATTAAGAAACTGTATTTAATTTTTTTAAAATATTTGTTCTTGT ATTTGTAAGTGCATTAATTAATTGTATATTGAGAGATGGTTGAGAAAGGGAATGCTGAACTGAG ATAGCAAGAGATTTAATGATGCTTCATTTTTTGTTAACATCAAGTCTAACTAAGAAGCCAGAAA ATGATTTCTACTCTTTCTTTACCATAATCTTAATAGCTAAAAATTTCCTTATGGCAGTGCATTT CTAGGGTCGTCTAAATGTAAAGGAGAAAATGGTTGATCATACAAATTTATTTTATTTCTTGGAT CATGATTTTCTTGAAGTATATATATTTCTTTAAGTTGGTTGGAGGCTACAAACGATTTTGTTAA TTTGAGTAAAGTTCTTGTTGGAAGAAATGTAAACTTACCCCCTATTTTACCTATTTTAGAGTGT ATTAAAGTAGAAAGAAGAAAGAAAGAAAAAATAGAGAGAAAAAACTATAGATATAGTGAGGATA AAAAGAAAAAGATAGGAAGAAAATGAACTTGAAAAATTTGAAGAGAAAGCGGTCAAATATCGAA TTTCGTAGGGTTGTTTTTAATTATTATATCCTATAAGCAAGCTGGTACGTAGGTACGATATACA ATATGACATTGAGTTTCATGTGAACTGACGTTAAGGTCACATCTTCAAAGACATATGTACTAGT TTGATTTGAACTTCAACTTATGGCATAATTTCATAAAGTTTGTTTTCTACTTTGATTCTTTGAC TTTATTTTGATACTAAAGTTTGTTAAATTAATTTCTGCCTGTGATCGAAGTGCAGTTAGTTTCC TTTGATTGCAAGATTTATGTAGAAATACAATTAGGAACAAAATATTTCTGCCAAAAAAGGGAAT AAAAATATAAATTTCTGGTGTTGTAAAAAAGATTAAATTAAAAATCAATTTGCTCCCTCCACCT AATTAAAACTATTTCTCATTTTAGTTAAGTGGTTACATGAAAAGATGTTGACAAATTGATGTCA GCCGTGCGCTTGTCAAAGTTACAGCAATATTATATTTGGTGTCTATCAATCTATAAAAAAAATG TCTAGATTTTTTGTTTTTGCCCTTTGTCAAAGTTATAATGGTTTGTAGATTCAATTCTCATACT TGGTACCATTTTTCGTTTGTTCATACATAAAATTTACACTTCACTTTAGTCCATATATAGGTAA AATATTCTACATTTTTATACATTAATTTTTTTTGTTTTGATAAAGAAAAATCTAACTCTGATAT GACTTTAATTAATAAGTGGTAGGGATTAATTTGTAAACAATTGTTCAAGTGGAGATCAAAATGT GAAGTTTATTTATGTAGGGAATAAAATGGAAAACAATGTTAGGTTATTGGATAGTGACTAAATT CATACTTTAAAGTTTAATCTATAAAAATACCTCTATCTATATAAATCTTCGGTCTTCATGTGAC AGGCAAGGCAATTGCAAGAGCAAAATGGCATCCTTACAAAGAAGGTAGAAGCCACATGTGCCTC TCTAATCTATCAGTCTTCTAGACAACAAAGGATAAGGAAAAAAGAATAAAATATAATTAACTTT TGTTACATTTGTAAATAGATTAAGGAGAAAGGGAAGGAAGTGGTTGAACGTCCACACTGCGGAC CAGAAACCTTAGGTCTAACTTGTCCTCCAGAGCTACAACGACAGCAAAGAGTATTTCCTTCTTT AACACTCTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.034050223

Conservation Information
Conserved circRNAs	NA
PMCS	0.034050223

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4541742-4543009(-)
						
						Potential amino acid sequence
						
							MQSVKEGNTLCCRCSSGGQVRPKVSGPQCGRSTTSFPFSLIFFVRMPFCSCNCLAFFCRSEMDS
FITWFFLVRMRFIAVSS*(-)
						
						Sponge-miRNAs
						
							gma-miR396a-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4541742-4543009(-)
Potential amino acid sequence	MQSVKEGNTLCCRCSSGGQVRPKVSGPQCGRSTTSFPFSLIFFVRMPFCSCNCLAFFCRSEMDS FITWFFLVRMRFIAVSS*(-)
Sponge-miRNAs	gma-miR396a-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chen et al., 2018

circRNA

Detail information of GLYMA_19G034600_circ_g.1

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