Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G20696_circ_g.11 |
ID in PlantcircBase | ath_circ_003656 |
Alias | 1:7181031-7181263 |
Organism | Arabidpsis thaliana |
Position | chr1: 7181031-7181263 JBrowse» |
Reference genome | TAIR10.38 |
Type | u-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G20696 |
Parent gene annotation |
high mobility group B3 |
Parent gene strand | + |
Alternative splicing | AT1G20693_circ_g.2 AT1G20693_circ_g.3 1_circ_ag.4 AT1G20693_circ_g.5 AT1G20693_circ_g.6 1_circ_ag.7 AT1G20693_circ_g.8 1_circ_ag.9 AT1G20696_circ_g.1 AT1G20696_circ_g.2 AT1G20696_circ_g.3 AT1G20696_circ_g.4 AT1G20696_circ_g.5 AT1G20696_circ_g.6 AT1G20696_circ_g.7 AT1G20696_circ_g.8 AT1G20696_circ_g.9 AT1G20696_circ_g.10 |
Support reads | 1/1 |
Tissues | root;leaf |
Exon boundary | No-No |
Splicing signals | GT-AG |
Number of exons covered | AT1G20696.5:2 AT1G20696.1:2 AT1G20696.4:2 AT1G20696.3:2 AT1G20696.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.154621495 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |