Detail information of BGIOSGA015688_circ_g.1


General Information
CircRNA Name BGIOSGA015688_circ_g.1
ID in PlantcircBase osi_circ_005293
Alias 4:1208800|1211071
Organism Oryza sativa ssp. indica
Position chr4: 1208800-1211071  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015688
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015688_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015688-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGAAAGCCTGCGCCTCCCAGGGCCAAAAGGATAGCCATCAAGGGCTCGTATGGCCTCATCAC
CATCACGCTCATCCTCAAAGTAGACAAAAGCAAATCcttcgatagcgatcattaacaggactcc
tgtcatacgaaccgtacacaggactcctttgacgaccgtagtcaggacttgggcgtgacctgta
cactggac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCGATAGCGATCATTAACAGGACTCCTGTCATACGAACCGTACACAGGACTCCTTTGACGAC
CGTAGTCAGGACTTGGGCGTGACCTGTACACTGGACTAACTGATCGACGATATGGACTATCATC
TCGCCTACCATAGCCACCTCTTGCACCATCATACCTGTCACCTCGTTCTGTATCATCCCTGAAG
GCATACTCAACAGAAATCACCCTGTCCAACAACTTGCTGCAGACAGAAGGAAAAATACAGAAGG
CATATTGGTTACATGCTACAATAATTTCAAAAATATCAAAATCATTAGTGTGTACAGAATTGCA
TAGATTTCAGAAGCAGCATAACTGGGTAGCTGTGTGCCTCTACTGTTGTGTTTTAAGCAAGACT
AGAAGAATGATTGAATAGTAACATTCCTAACTGAATCGAACAATTAAAGCAATATCTGCTAATT
TTCCATGCACGTCAGAAACAAAATAATCAATGAAGCGCCTATGTGGAAATTTCATTTATCCTAT
ATAAGCTTGAGAAAGTTCCTTATTTGCCATGCAAAGTTATCCAATTTCCTTATTTGTCAGCGAC
AATTGATTGTCCCCTTGCGACAACCATATGAAATTGTGACCCTTACATGCCTTCAATACCATTA
ACGTTTCTCTGTTTTTGGCATATCCTAGGAATTACCAAAAGATACTCCTTCCGTTCACAAATAC
TTGTCAGTTTTGACTTTGACTAATCATGCTTTCTATAGTTATACCTTTCAAATTATATAACTAT
TGTATCAAATTGGTGTTGTTAGATTTGTGATCAGAAGTACTTTACTAATATTGTACATTTAGAG
CTATTCACTTTTGTATTACCTAATTAAAAAATTAATGGTCAAAATCATATTCATAAAAGTCAAA
ACTGACGAATATTCGCAAACAGGAGTCCTTTAATTAACTTCACTATCTCCCGTATTACCCAATC
TACATCCAACTATCTCCCGTATTACCCAATCTACATCCAAGCCAGTAGCTGCTCCTATGCTATT
TCCTCATTCCCTCCCATCAGCTCAAGCAGAAACCTTCCTCCCCACCCTCCACGGCGGTCTTCGC
CCAGAATCCTCCCCGGCACTATGAGCAACCATAGCATGAGTCCGGCAGCACTACCTCCCAAATA
TAAAAGCTGCTACTCAGGATCCCCATGGCTGCATGGAATTTGAGGGCAAGCACCATCACCATGT
CCATGGCAACCACCGAGCAGCCCCCACCATGGAACGTTTCTACTACTGCAAGTTGTAATCTGTA
CCAACAAACTGCAAACAGCAGTACATGTTGGGCCACCGATCTACCACATATGGTATTTCGAAGA
GGAACTAGATATATAGCACCACTATGGTTCAAGGGTTCATGTTTTGTTGGCCGGACCACCAGAC
AGATTTGGCAACAGCGGCATGGTTGCAGTTGAGGGAAACTCTAGGAAGATCCACGTGCAACAGA
TTTGGCTCGTTCATTTTTCTATAAGCAGTGGGATCCACATGCCATGTTTTTTTTTTTTGTTATA
TCCAAATTCTGAACGGGTTGCGAAGAAAGGTAGACTTTGCATATGCACCATTAACAACCCTCTA
ACAGAAAATTACCATGAGTGGCAAATAAGGGAGCAATTGAGAAAAGGTAGCAAATAAAGGAAGA
GACAACTCTCAGTGGCAAACAAAAAATTCACGTAACTTTACATGGCAAATAAGGAAATCTGGTA
ACTTCGCATAAGGAATCTCAACAAGGTTAAGAAGAGGTGAATCAGATTCATACGTAGAATGAGT
AGCTTCAAGTGCTTTTGTGGCCTCTTCCTGTGTTTCAAACTGCACAAAAGCAAAGTTCCTCCTG
ATCCGAACATTCGAAAGCTTTCCAAATGGTTCGAAATGCCTTTCGATATCAGTGACTCTGGTGT
TGATGGGGTCAAAGTTAATGACAAATAGTGTCTTCGTGGGTTTAGTATTCACAGGTGGTTTGCT
ATAGCCATCACGCCTGGAACCACGATCACCCTGTAATAAAGGCCATAATAACGAATGCAATACT
TTGACATTAAAGACCGACTAAATTAAACAACAAAACTCTCAACATGTAAGTAAAACATGTTTCA
ATTTTTTCAGGGTTATAGGTGGTGACAAGAACAGCAAGAGAAATTACCCGTGACCACTCCACCG
AAAGCCTGCGCCTCCCAGGGCCAAAAGGATAGCCATCAAGGGCTCGTATGGCCTCATCACCATC
ACGCTCATCCTCAAAGTAGACAAAAGCAAATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 1208997-1211052(-)
Potential amino acid sequence MPSGMIQNEVTGMMVQEVAMVGEMIVHIVDQLVQCTGHAQVLTTVVKGVLCTVRMTGVLLMIAI
EGFAFVYFEDERDGDEAIRALDGYPFGPGRRRLSVEWSRGDRGSRRDGYSKPPVNTKPTKTLFV
INFDPINTRVTDIERHFEPFGKLSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEY
AFRDDTERGDRYDGARGGYGRRDDSPYRRSVSPVYRSRPSPDYGRQRSPVYGSYDRSPVNDRYR
RICFCLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021