Detail information of GLYMA_04G069200_circ_ag.2


General Information
CircRNA Name GLYMA_04G069200_circ_ag.2
ID in PlantcircBase gma_circ_005744
Alias gma-circRNA0533, circRNA2558
Organism Glycine max
Position chr4: 5773924-5778659  JBrowse»
Reference genome v2.0.38
Type   ag-circRNA
Identification method find_circ, CIRI, CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing GLYMA_04G069100_circ_ag.1 GLYMA_04G069100_circ_g.2 GLYMA_04G069200_circ_ag.1 GLYMA_04G069200_circ_ag.3
Support reads NA
Tissues flower bud, pod
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGTCAAGGAAGATAGCTTACTGTTGCTGTGCAGCTAAATCAATTTGAACTTCTGGTGGAGCC
AATGCAGGAGATTCCACAAAGTGCAAGTTAGGATCAcctgcaagtttcctggccaaatagagga
aaggcttctcgaaattgtagttgctcttagctgaaatctcatagtactgcaaattcttcttcct
gtggaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCAAGTTTCCTGGCCAAATAGAGGAAAGGCTTCTCGAAATTGTAGTTGCTCTTAGCTGAAA
TCTCATAGTACTGCAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGCTTTCACTTGCCTGTT
CTTGACATCAACCTTGTTACCGCAAAGAACAATTGGGATGTTTTCACAGACCCTGAAAAACATG
TGAGCAAAAATTACGCATGACACAAACAACATGATGCCAATAATTTAAGACAAAACATTCAAAA
AGTTTTCAATGACTTCATTTACAAACCTGCAAAGATCACGGTGCCAGGTGGGAACATTTTTGTA
TGTTAGCCGGGCAGTAACATCAAACATTATAATAGCACATTGCCCATGGATACTGCAACATAAA
ACACCATTTTACAAGCATTAAAAGTTTGCATCACAACAGAATTAAATAAAAAGCTAGCGGACAT
TGCCAGTGAAACATTAAAAATTTCATTACAGTTCTGAAATTCTAGATATCTAACAAAATCATTA
GTCATCCTAAAGACTACAAATCCATGTAACCGACATGCAAAACTACAACTCTAACACTGATACT
GATAAACATAGTGAATCAAGCAGTTACAATTGTTAACTGAGTAACGAATTCCCCATTTAATCAC
CCACGCAGAAGAAGTTGAGATTGAAAAACCATCTTAATCGTCATAACAAACACAATCTGATACA
CTAAAAAAGGTGACTTACTAGTATCCATCTCTGAGGCCACCAAACTTCTCCTGTCCAGCAGTAT
CCCAGCAGTAGAATCGAATCTTTCCACAGTTTGTGAAAAAATCCAATGGGTGAACCTCCACACC
GATGGTTGCTATTTTGGAAAAGCAAAAATGGAGAGAAAGAATAAGTTTAGGTGGAACAATATGA
ACAACCTTAACCTTAATTTATTTAATTATAAATTATTCTTACGCTCATATTTCTTCTCGAATTC
TCCGGTGAGATGCCTTTTCACAAAGGTTGTCTTTCCTGCAAAATGTTCAATACACCATAAATAT
CATATGCCAAGGTATAATAACCTAGAATTTTACAAAAGAGACATGCCCCTTATAAAAAAGAATT
AATAAAGAATAGAAGCTAATCGCTCAAAATAAAACGAGAAAAGGGGAAAAAAATACAAAAAAAA
AACTTACCTGTGCCACCATCACCGACGATAACGAGTTTGAAACTAGGGTAATCCACGGTTTGCT
GATTGGGCAAAGCCTGCAACGCAAGAGATCAAGAATAAATCGAAGGCCAACATAAAACTGAAAC
AAAAAAGGAGTGTTGAAAGGAGAGAGCGTACCATGGAATGAAGAGTATAGCGATGCTGCGTTAG
GTTGAAGAGAATGGAAAGTGATGCAGAAGAAAGAGAGAGCACACAACGAAGCGAGGGTTTATAT
TGGGAGGGTTTCAAGTTCCGTATTTTGAATGAACGCGTTAACCTAACGCGGCTATATCCACCCT
TTGATTACGCTCACTTCTCAATTTGAAATTCATCCGGGCTCGGCCCAACCCTAGCCCACATAAA
TCTTCCCACCATCACATTTGGGAGTTGATATTTCCACCGTCACTTTTTGAAAAAATAGTAGGAA
TAGACAAAAATGTTTATCTGCATATTTTTCTCACTCCTTCCCCTTCCTTCTTCCCCCATTCTTC
TCACCACTGTTTCCACTTCTCCTTGCATTTTGTTTTTGTTTTTTTATATACAGTGAAAATATGA
TTTTATTGTGTTCTGGGTTGAGAATCACAACAGAATTACATTTTCGTTGTAGTTTTTGTTTTGT
TTTGGAAAACACCGCAATAGAAGTACGATTTTGTTGTGATTTTCAACTAAGAATTCAACAAAAT
CACACTTCCCTTGTTTTATTTTTTTTTATTTTGAAAAACAACATAACAAAAGTATGATTTCGTG
TTATACAGTGAGGGTGAAACAAAATCATGATTTTATTGTGTTATTTGGAGGTGGAATCAAATAA
CACAATGAAATTATGATTTCATTGTGTTATCTAGGGGTGATGAAAAATTACACAACTGACTCAT
GTTTTCGTCGTGCAATTCACGAAGGAAAAAGATGCACAACAATAACACAATTTTGTTGTGTATT
CCCCTCCTCCCTCTCAATTGTATAATAGAAATATGATTCCATTGTTTAATTTTTCAGGGGAAAG
TTTTAGAATATGGGTGAAATGCACTCACGTGGGTAGTGTCATTAACAAAAGTAGTAGTGTCTAT
AGCAATATCCTCTTCATTTTATTATTTATTGGTCTAGTATTTTGGTTCCTTGGTTCAATGAGCT
GGTTCCTTAGTCTCATGAGAACTATTATTGTCACTACTAATTTTGCTAATGACACTAGAAATTA
GTGTGAACTTTTTCTTTTGCCCACTCATCAAACCTTTACACCCCTTAGACTTCTCTTCACCAAA
ATCCCGCGCCACCCTATCCCCGTCCTCCAACACCATTGCACGACCCCCCTATGGCCAGATCCAA
AATCTTTGCGACACCTTTCCTTACAACTTCCACTCTGTTGTGTCGCGCCACCAGCCCAGATCCA
AAATTGCCACACCTCCGTCATGTCATGCTAACGTCATCCTCCCCATCAAGATCTACGCAACCTT
GGGCCACCATCAAGTTTTGAGTGTTTGCATTGTTTTGTATTTGTGAGTGTTTTGTGTTGGTTGT
GAGAATTATGTTTTCGTTAAGTACACAATTTAACCTTAATAGAAATATAATTTTATTATACATT
GTACAATTAAATAATGTACAAGAGAATCGTATCATCATTACATTATTTTTCTTTGTACTTGCAA
GTAACAATGAAAACATAATTATATTGTATATTTGTGGAATAAAATTGTATTTTCGTTGTGATTT
ATTTTTTTCACAATTTGGGAATATAGCTAAAAGACACCATGGGGATAGTGCCAATATCAATACC
CTAGTCTTATTTCTTACTATTTCAAGTAAATTACATAAGACATTCTTGAAGTTTGCACTTATTG
CACATGATACCCTCTATTTTGAATTCCTACAATAAACCTCATTACACAGACCCCTTGACATTTT
GCCATGTAACTACACATTAGTTTTTTTTTTAATAAAAAATATCCTCATCTTCATTTAACACTTG
CAAACAGAGAATTATTTGCAAAATACCTTAAGAACACAAGAAAATCTGTCAGAACTTAATTTTT
GTTTTCTATCAGATTTTTTATTTCACATCAAGTAATTACAGATCAAAATTCGTAAATCAAGCTA
TTTTAAAACTCTTAAGCATCACCAGCAACATTTACACTTACCTAATCACGTTAATTTTTACTTC
CAAGAGAAAAAAAGAACATTGAAAGTTACAAATCATATCCTTAAAACATGGAGAAATTTTTTCA
AAAGTTTCACAAAAGAATTAAATAGAATGGATTGGAACACCCAATTTTGCTTCAAACAAGATAT
CAAAACTAAAATTTTAACACATTTCAGTCTATAGGGTTTCTAAAATATACTACAAAGTAATAAG
AAAAAATCCAAGGAAGGAAGATTTTCAGAAAGAAACTATTTCATGGGTTAAAAAAAAACAGAGG
AATACATTAACGTCAAGCATCGTTGTCAGAATCCGTTTTAAGCACAACTCAAATATGAAGCTAG
ATAAATCTCCAGACACCACATGACGTTATAAAGTGACCGTTTACAAGAAAACAAAGGCCAAAAT
ACATAAACCATTCACGCCAATGGAATGTATACGAATATGTACGTAATGTTTTCGACATTGTTCA
CTGAATATTAAATTGACTTCACCAAACTAGTCGTTTTAAATAGGAGGAAATAAGCCAATATCAT
TTCTTGTTGGAGGGACAAACTCGAGAAGCAAAATAGCACTTGGCACAAACAGCCTTGTTTGCTC
TTTCCCCCGTGTCTCTCTGTTCAAGAGAGCCAAATCACACAAACACACGCACTACAGCCCTTGG
CCACAAGGATATGTCAAACTATTGGGAGAGATTTTTAATTAAAGCAAAATGATTAAATTTCTGA
TACTCAAATCCGCATCCAAAAAATGTCAACAATACACCCCCCCAAAATACATATCATAGCATAC
GCAGTAACACGACTCAGAAAAAGCACAATTTTACTCAAAAGATTCATCATCATCGTCAGGAAGG
GGCTGACTAGCAGCTGCAAGAAGCTCAGCTTCGTGTCTGCAAAAGCAACCAACAAATAAATTAT
TGATAATTGAATAGGAACAATTCCCAATTGAAGAAGAACAAATGAAACACAAGGAATTTTGTGG
ACTTCATTAAAGAAACTAAACACTAATATGCCATTCTAACAAAACGAAGGACTAGTTTGTTTAA
ACTTATTTATTAAAATATGAATTTATTTTAATAAAATAACCAAATTTCTATTTTTTAGTGTTTG
TTCTAAATTGTTTCTGCTAAGAAGTTTAAAGAAACAAATACTATCTGCTTTTTTAAAAAATGAT
TATATAAAAGACACTTATTTTAAAGTTGCTTTTTTAAAGTTAAAACAAACTCACCCTAAAACAA
GTTAACATAAGAAAACAGTTTGAACTTCGAAATGCAATGCAACTATGAATTCTACAATCTATGT
TTTTATCCTGCTGTAGAAAGAACTAATTCAGGTCAAGGAAGATAGCTTACTGTTGCTGTGCAGC
TAAATCAATTTGAACTTCTGGTGGAGCCAATGCAGGAGATTCCACAAAGTGCAAGTTAGGATCA
Conservation Information
Conserved circRNAs NA
PMCS 0.963724106
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2018; Ma et al., 2021a