Detail information of Os03g0690600_circ_igg.1


General Information
CircRNA Name Os03g0690600_circ_igg.1
ID in PlantcircBase osa_circ_021058
Alias Os03circ23047/Os_ciR768
Organism Oryza sativa
Position chr3: 27584053-27588715  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0690500_circ_ig.1
Support reads 2/45
Tissues leaf/root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACAAAATGAGAAAGCAACAATCGGCTTCTGTTCAATCTTTCACTGTAGTATTTCCATAGAAA
TCCATCTTGAAATGAAGTGGAAGGCCCAAGCTTTCActgagtgcgtgcactatatgcccaggat
agcaggaacggatttgaggctcccagcaatccacgtccagagataaagaggagagaaaaagaga
aagaaacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 168
Transcript exons: 27584053-27584109,27588605-27588715
CTGAGTGCGTGCACTATATGCCCAGGATAGCAGGAACGGATTTGAGGCTCCCAGCAAGTTTTGC
ATGAGAACAAAATGAGAAAGCAACAATCGGCTTCTGTTCAATCTTTCACTGTAGTATTTCCATA
GAAATCCATCTTGAAATGAAGTGGAAGGCCCAAGCTTTCA

Transcript length: 176
Transcript exons: 27584053-27584150,27588638-27588715
CTGAGTGCGTGCACTATATGCCCAGGATAGCAGGAACGGATTTGAGGCTCCCAGCAATCCACGT
CCAGAGATAAAGAGGAGAGAAAAAGAGAAAGAAATCGGCTTCTGTTCAATCTTTCACTGTAGTA
TTTCCATAGAAATCCATCTTGAAATGAAGTGGAAGGCCCAAGCTTTCA

Genomic sequence CTGAGTGCGTGCACTATATGCCCAGGATAGCAGGAACGGATTTGAGGCTCCCAGCAATCCACGT
CCAGAGATAAAGAGGAGAGAAAAAGAGAAAGAAACCTTCCTTCCAGTCCAATCATAACCTGCAA
GATTATAAGCAAATTAATTTGGTTCCCACGAAAAAAATACAATAGTACTAATACTAAATTAATT
GGGGGAAAAACATGGACCTCTCATGGACGCTTTGCCTTTGCACCAAGGAAATCTGGGTCACAGA
TGGGGATAACCACCACCAGCCAGCTGCAGCAGCATCGGACAAGCATCGGACAAGAGAAGAAGGA
TCAGGCTCCCCCATCAATCCTATCATTATGATCAGCTTCTTTTACCCACTCACAAGCCTCCTCC
TTTGGTTCCATGTCTCTCTCGCCTTTATTTTTTTCAGCCGCCGCATCACATGCATGATACGCAT
GGCCCATCATCCTATGTAGCAAGAATCTGACTGATGTTTCAATTATCAGAATACGTTGTACCAG
CTTCACGAAGATGTTTCCAGGCGCTAGCTATAGCTTCAGTCCACACAAGGACTGAAGCCAGCAA
ACACTGGTTTCAATTATCAGATGTACTAGCAGAAGTTCTTCACGATACCTTGGGAGGGTTTTCT
TTTTCTTTTTCCCTCTTCCAGCTCACCTTCCGAGTTCCGATCATCACAAGAAACATCAATTCGG
GTCCCGATAGAAGATGACCGACGCTGGCAGGTGGAATGGGGAGAAGCAACAGCAGTAGACATAT
CTGCACAGTCAAGAGGAGAAATTTCTAGCACAAAATAGCTGGAAGACAAAATCTTAGATAACAC
AAGCACACAAAAATCTCAATTTAGTGGTTTCACCAGTAGAGGAACCCTAGTGTGTGACACTTCA
CATGTTTGCATTGTTTAAACAAAGGTTCTTGCGAGATCAATCTGATCTTTAACTCCTTTTTGAC
TCATAAGTTTAACTCCCTTCTAAGATCTACTTATAAGTTATAACTACAGCATTGGCAGTATAAT
TTTTACATCCTGATTTGTTTTTCTTCAGTTTCACATGAGTCAACATGTTAAATTCATGAAAAAT
TGCAGATACAAAGTAACCAATATCTGTGAGTATATAATTATTTAGCTTTACAAATGCATGAAAA
ATATCAAAAAAAGAGATTCGTCAGTTTCTTCTCACTTCGTCAGTCTAGCAACTAAGTAAATACA
AGTACATATATCTTCTTCGATGATCAAGCCACCACCATTTTTAGATAATGGATAAAATCCAGCC
TCTATATCCAAAGTGGATGTACACAGCCAAATCTAGCCAACACCATATAGTTGCAGTACACGAT
TGACAATCAAAAAGACATGTTCTTAATCTAACAATAGCTAAACGTGTGCCAATATTATCATGGA
TAATTAAATGAGAACATACATTCACCAGACGTGCAAAAAGAAATGACAAGATGTGCAGAAGGTA
CTGATATCTAAGATGACTATGGGTGGTTGCTAGCAGCTAATAATATTTCCTTTTATCATGAAAG
TGTGTTTGTTCCACTCATATTTTATTTAGGACACTGGGCATTAAATAAGCATCAGAAGAAAATG
TCATCCACAGTGATAACCAGCTGCAAGCACAAATAATCATAACCTCAATTGATTTTTTTTTCTA
ACACAAGTTCATTGTTCCCTCTTCTCACTTCTGTTACTATGAACCTAACTCGCTATCAAGATGC
CCATCACTTTTTCGGATTATCTTCAGCCATCCTGTGACTAAAACTTATGAGCAGATCAAAATGC
AAGTGTCCCCTCAGATATCCAAGTGTAAAGAAGTTTCTATAATTGGTTCGTTAAAATTCTTGAA
TCCATCCTTCACCATATGCACGAATCTATAATATGTCAGCAAACTAGAATATACTACGTAGAGA
AGAATCATGATGTTTATGAACATTCCAGGATGCCAGATCAACCAATAGGCACTTATATAGCATG
AAAAATAAGCTAAGAGATAAACAATGTGTACATATAAACAGAAGAACAGAGGAGCAAACTCCAT
TTGATGTAACCTAACAAGACAACCTGAAGTAGAAATCAACATATATAATAGCCTTTTCAATTTC
AACATATATAATCCAATAGCGAAGATGTCACGAGCAAGGATTATATGGAGAAGAATCGGGATGA
ATGGGGATAGATTGGATTATAGTAGATGAAATAACAAGGAATACGGTCCTGAACCTAAACGGCG
CGACGCTCTCCGTCGCACTGAGAAGGCAGGCCGATGGGCACTAAGATAAATATTGATCTAATGC
CTAACTGACCTGGGATAGGATCCCTCCTTATATAGATGGAGGGCTACTTAATCTAATCCTAACA
AACCTTATCTAATCCTAACAAACCCTAATTCTATCTCATGGGCCTAGGACTCCCGGCCCAAAGC
CCATGACATTACTCCCCTCTTTTTGAGCAGCTCGTCCTCGAGTTGCAGCGGACCCTGCTAGACT
CAAACAAAACACCATAACCTAAACTAAGACTCTTAAGCCTTTTACATCTCGGCTTTTATTATGA
ACAAAAATAAGAAACAATTCATGCGCAGGAGGACCTGGTCCTACAGAAACCCTGAGCATGCCTC
CCACCGAAGCCCACTTGTCCAGCCCAACAGCAAAGGAATAAATAGTTGACTCGGATGCTTCATG
GGCCAACGTGGAAACCACCCAGACCAGACCAGCCAACCCAATTGGGAGAGGACAGAAACCCTAT
CCTCTTGTTCTTCACGAGGCCACGCCGCCAGAAACGATGCAGCCGTGATCGAGCCGCGAGCTTC
ACGAACCAACGTGTGGACCCGGCGCAATCTGCGCCATCGCGACGCACGAGTGCCACGCCCACCC
GTCGCGCTCGCGACTCGAGCCGCATGCACGCCGCCTGGCTTTGCTCCAACCGTTGCCAGAATTT
GCGCCACCAACTGCGGAAACCGCGTCGCATCGCCTGGAAATCGTGCCCGAGAACCGGACACCCA
AGTCGTGTTGTGTCGCTGTCTTCTTCTCCACCACCATTGAGGGCGCCAATGGCGACGGCGCCAT
CGCCAGTCCCAGCGGCAAGGTCGAGGTTGCGCAGCCACTCCCGGACTTGGCGCCGCGCGCCCTC
GCGGACGCAAGGCCACCGCATGCCGGTATAATGGTTCGGCCTCCTCAAGGAAAGCAACCGGCTC
GGTTGACTGAGCCGCCAAGGCCCGGAGTTGCGCCGCCAAGTTCATCATCTTCTTCGAGATCTCG
GCAAGACCTTCGCTAATGTTGGGAACCGCAGTGATCTCGGCACCCATGGGCACAGAACCGAAGC
TCTGATACCAAGTTGTCACGAACAAGGAATACGGTCCTGAACCTAAACGGCGCGACGCTCTCCG
TCGCAATGAGAAGGCAGGCCGATGGGCACTAAGATAAATATTGATCTAATGCCTAACTGACCTG
GGATAGGATCCCTCCTTATATAGATGGAGGGCTACTTAATCTAATCCTAACAAACCTTATCTAA
TCCTAACAAACCCTAATTCTATCTAATGGGCCTAGGACTCCTGGCCCAAAGCCCATGACAAGCC
CATGACAGAAGAACCTTCTTCGAGGAGCAGCTTCCCAACCATCTCAATCTCTTAAAACTATCCA
GTATCCACACATTGTCATGACTGAAAACTCATGTGCAGAATCTTTATTTTGCCGATACATCTTT
TATCTTATAAAAGTATAAAACAGAAAACGCTGAAGAAAAACAGATAAAATCTGTTATCTCGCTT
ATGACTTATCAATTAACACAAATTAGGTTATTCCATTAAGACTTATAAATCAGGCTGGAAGGAG
TAGCTTTAAATTGAGGTGGCCTAAAATTCTTTTTTTTTAAAGAAAAAAAAGTACACATCCACAT
ATATCCCCAACAAAACAGATCGAAATGTTGTAAACCTATAAATGAAATAAAAAGTTACTAAAAC
AGAGACTACTGAAACTAAAAAGGCACTACTGATTTTATCTTTAAAAGCTGATAGTGCTGGAGGA
ATCATTGAAAGAGATCATCACGGTCCTTCACTAGGTCAGGCCGCGATTTCCATAACCCTGGTGG
GTTATACTCCGTATAGAACGAATTTTACACAATCGAGAAGGTTTGGCATCTGCCAGTGAGTGAC
CCTAGAAAATCGAAATTAGAATAAGCAAAATTTAATACCATCTGTTTGTCGCAGAAATTTACTA
ACACTAGATGTTTCGACATGTATTTGTAACAAACCTATGGTACATTTTTTATCATGGCATCAAA
CTGCTTAGAAACCACATAATTGAGCATTGCCTGATCAATCAGTTGGTCCTAAACAGCATTTTAT
GCACAAATCTAGGCGATTGAGATGCTATTCATTTAAGCAAAAAAAAAAAAAGTAACCACTGTGT
GTGAATAATTCAGAAGATACCGCTAGTCATGCTGTCTCTTATAGCATAAAGTATGCACAGAAAA
TCTATATTTATGAATATACCATTATCGAGATACTATTATTTGGAAAAGGTAAAGCAGTCAAAAT
TTTACCTGGTTTTGCATGAGAACAAAATGAGAAAGCAACAATCGGCTTCTGTTCAATCTTTCAC
TGTAGTATTTCCATAGAAATCCATCTTGAAATGAAGTGGAAGGCCCAAGCTTTCA
Conservation Information
Conserved circRNAs osi_circ_005027*
PMCS 0.319913293
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR156k
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015