Detail information of 4_circ_ag.2


General Information
CircRNA Name 4_circ_ag.2
ID in PlantcircBase ath_circ_030903
Alias At_ciR115
Organism Arabidpsis thaliana
Position chr4: 8289830-8294537  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_ag.3 4_circ_ag.4 AT4G14400_circ_g.1
Support reads 52/44
Tissues leaf/aerial, seed
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTCTCGATAACCATGACTCGAGACATTAACGACTTTTAAAACTAAGGGACGAACCTTAAGCA
AAAGCTCTTGCATTACTCAAATTCTTCTGCCACTTGgtttgcgatggacagttctgaagcagag
ctagatagaattgaggcacaaaggtcaacagatgcgtctcatgatcaacagaacagaacatact
tacccatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGCGATGGACAGTTCTGAAGCAGAGCTAGATAGAATTGAGGCACAAAGGTCAACAGATGCG
TCTCATGATCAACAGAACAGAACATACTTACCCATGAACATACACGGTTCACAAGACTTCTCTC
AAAGCGGAGGAGATGGCGTCACGCCACTTACAGGAGACACCGAATCTGTGCCAGAGTTCCTTAC
TAACCTTAGATTGTCGGATCTTTACGCTATCCGTGGTGAAGATGTCCGGATGATTCCAGAGGTT
TTTAGTAAAATAAGTGATGGGAACAAAGAATGTCTGGAGAAGTTGAGAAGCCGTGGAATTTCAG
TGGCACGTATCAAGAGCAATACAGGAGATTCAATTCTTCATCTTGCTGTTACATGGGGTCATCT
AGAACTAGTGAAGGAGATTGTCTGTGAATGCCCGCGTCTTCTCTTGGAGCAAAACTCAAGCGGT
CAGACACCGCTACATGTGGCGGCTCATAGCGGTCATACCACTATTGTTGAGGCTTTTGTCGCAT
TGGTAACATTTTCTTCAGCTAGACTGTGTAATGAAGAGAGTGAGAGAATGAACCCATATGTTCT
CAAGGACAAAGATGGAAATACTGCTCTGTACTACGCGATTGAAGGGCGCTATTTCGAGATGGCT
GTATGTCTGGTGAACGCAAACCAGGATGCTCCTTTTCTTGGAAATAAGTATGGAGTATCTTCCT
TGTTTGTGGCAATAAATACTGGAGATGTATCTCTTGTGAAAGCAATTTTGAAAATCATAGGCAA
CAAGGACCTTAAAGGGAAGAAGTCTAACTTGGAGTCAAAGTTACAAGGGCAGAAATCTCTTGCA
CATGTTGCTTTGGTGACCCAGAGTATAGGTTTGTTTTTCGCTTTAACCAGTAGCAGCTGCATTT
ATTCTATTCAAATATGTAAAACCAGTTTGAGACGGGAATTTCCTCCTCAAGGCGGTAAAAATAT
TTGTATGTATACTAATTGTTGTTCCCAATTGTTTGAGCAGGTGTCCTTGATGTTATTCTTGATG
AATATCCAAGTCTTATGGACGAGCGAGATATAAATGGTTGGACTTGTCTTTCACTCGCAGCACA
TATAGGGTATTATGAAGGAGTATGCAACCTCTTAGAACGATCAACAAAGGGTGTTTATGTCTGC
GACCAAGATGGTTCTTTTCCAATTCATACAGCTGCAGAGAAAGGTCATGAAAATATTGTTGAAG
AGTTTATAAAACGATGTCCAGGTTCAAAACACTTACTTAACAAACTTGGTCAGAACGTTCTCCA
CATTGCAGCAAAAAATGGGAAATTTTGGATTTCGAACATGTTGATAATTAATAAAGATACGGAA
CATCTGGGTGTTGGGCAAGATGTGGACGGGAATACACCTTTGCATCTTGCCGTCATGAACTGGC
ACTTTAAATCCATTACTTGGCTTGCTAGGAGTAGCAAGATACTGAAAGTGCGGAACAAAAACGG
CTTAAGAGCTAGGGATATTGCCGAGAGAGAGGTGAAACCCCACTACATCTTTCAGGAGGTATGT
ATAATTTCGTTTCATACAACAAAATTTGATATCACATAAATGATTTATAGCTCGACCCCCATTT
TTTGAGTTACAGAGGTGGACACTGGCGCTCTTATTATACGCTATTCACTCAAGGGGTTTCGAAT
CTGTACACTCATTAACAAAACCGTCAGTGCCACTAGACCCTAAAAATAACAGAGATTACGTCAA
CACTCTTCTCCTGGTAGCTGCTCTTGTAGCCACAATGACGTTTGCTGCAGGTTTTACAATACCA
GGTGGGTTTAACAGCTCTGCTCCACACTTGGGCAGGGCAACTTTGGCCACTAATCCAACTCTCT
TCATTTTTCTGGTACTTGACATCTTGGCCATGCAAAGTTCCGTTGCAACAATAGGTATTCTTAT
TTGGGCGCAGTTAGGTGATCCAGTGCTCATTCGCTCATCCTTACATGTGGCTTTGCCCTTACTG
CTTTTTGCTTTACTCTGCATGCCCTTGGCATTCCTTTTTGGCGTGGTCACTGCAGTTGGGCATG
TGAAATGGCTTGTAGTCATCATTTGCATTATATCTGTTTTATTCTTTTCTTGGGCGATCTTTGT
CCTTGGCCCTCACGTCATGCTACAACGGTCATACGTTTCTCCCAAGTACGCTGGTGACTTTCTC
GTGACTTTTATGCAGTATAAAGACATAATTGGGCTTTTTGTGTCTTTGATAAAGTTTCTTTTTT
GTGGTTGTTATTAAGAGTTTGTAGCCTATTCAAAGGCATTCTTCGTATGAAAAAATCATCAAAA
GTTTATTGATGAAAGGAGATTTTTGTTCTCTTTCAAAATAAAAATAAAAAGCTAGATATGATGG
TCTCTCTGAGAAGCGGTATCTTGGTAGCTTTAACTGATAGCTCAACTCACTCAATCCGTAGTCA
TCGAACACCGACTTCACAAGCTTGTCGTGCGTTATTTCCGTATCTATTTGCACAACTCTACACC
ATTTATCGACGGTGTTAAATACAAATTCTTTACCCAATCGTATCGAGAGAAGGATGAAAGAAGA
ATGAGGAAGACGGTGATGAATTGGAAATTCCGATGATGTGAAAAACTCATGTGAAGAAGACGAG
TTGAAAAAAAAAACGTTTCGTATTTCCTTTGATGATGATGACATGGACTGTTGCATCCGACATC
ATTTTTTTAATTGATGAAGTGACAAGTAAGCCACCAAACAAACATGAAAATTTGCCTAAATAAA
TCAGCCAAATAAAGTTATATGTTAGTCGCAACATGAATACTATTACAGTAATTAAAAACGAAAA
AACGGCAAGTTACTTCAGCCGTTTAGCAAACAAAATAAAACACACACACATGATTCGATTGCTA
ACCAACACAAGAAACAAAACAAACACATCTTTGCCTATAAGATAATGTGTATAAACCATACAAC
TAGTGATGTGACGGAGGACAATGAGAAGACTATTTCATTATGCTGAACCGTCCTTGACGTCTTA
GCAGTTAGCACTGTAAAATGGGTTCATATCATAGTAAACGAATCACTCTACACAACAATTACAT
GCTAAAAACTAAGAAGCTAAGTTACCAAATTCTCTATAGAAATAGCAATCACTTACAATAACCA
ATGCTACATAACAACTTTTGAGTCCATAACTGATAAATTGATAGAAACTGTTTGAATTTGCAAA
CCCAAAACCGTTTCTTAGGATGGAGAAATGGGTTTGTATTTTTCTATTTCCGATCAAGGAAAAA
TATATCAGGCAACAACTGCGGAAGATAGGGCATTTTGGGATGAAGGAGGAAACCATAGTTAACA
AGCGGAAACAATTTCAAAGGTTGATTTCAAAGATCATAAAGTCAAAGTCAAATCCCCATAGAGA
GACTCGGTTACGGAAGTGTTGGTATCCGAATATCCGATAGTCATAGCCTCAGAACTTATGTTAG
AATCAATAGGTTTAACCATGCAGTGTGCACTTTGGAAATCAAGCCAAGAAAAGCTATCCACGCA
AACAATTTGCGTTAGAGCGAAATCGGATAAAGAGAAAGAAAATATAGGATTTAAAAATCTTATA
GCGAGTAAGACTTATTTGAAACATCGTCAAATTTACTTCTTTTGGTGTATATTTCTCATTATAT
GGCGTATATATCTGTTTATGTAAGAAATTGTTTCCAAAAATTACTGTATACTGACTTTGTAATC
TTGTTTTGATATCAATGAATTTATAAGGAAAAAAATAAAATAAAAATATAAAGTATGATGTACA
TGTAAAAAAAGTTGTTTCAAGCGTAATTGTTTTTTGGCTAGAGAATGAATATACAGCAACAGTA
AACTAATAAACTTGCGATGAACTAAAATTTCTGGTATTCCTACAATCAATGAATCACTAATTTA
TCTATAAGTTTTAGCTATATCCGCTTAAACCCCGCCTCAACTTGCTCTCTGGTCTGGGTATAGT
TGGGCTACAACAGTGAAACCGTAATTAGGAAAGAAATGATAAAAACCCAATCCAGAAGCTTACT
GCAAGATAAAGAGAAAGATCATGAAGAGGTAGGAGTGATTCATATAACAAACAGGGTCACGTTG
TCACTTTCTCCCAGAAAAATACAAATTTAGACTAACTATATAAGGAGACGACTTCAGAGTCTTC
TAATGGGTTAGTATAACTCGGGTCATCTTTTAATCTCTGGCTTTAAAGACATGGTAAGATTCCA
TATATATGAAAACTCTGTGTGTGGTGGATTGCTTTTTTCATTTAAGGCAAAGATAGGTTTTAAG
GCAGAAGACAAGAACGACCTTTGGCTTATTTATAGGAGACCACCACTTTCACTTGAGTCGAGAC
AGTAACGACATTTAGAATTTGCATTACTCATCTTGTCACTTTCTCCCAGGAAAAAAAAATACAA
ATTTAGACCAACTATATTAGGAGACGACTTCAAAGTCTTCTAATGAGTTAGTAACTGGGGTCAT
CTTTTAATCGCCGGCTTTCAAGACATGTACAATTTCATATGAAAACTCTGTGTGTGGTGGATTG
CATCCAAGACAGTTTTAAGACAGAAGATAAGAACGGCCTTTGCTTATTTATAGGAGACCACCAC
TCCTCTCGATAACCATGACTCGAGACATTAACGACTTTTAAAACTAAGGGACGAACCTTAAGCA
AAAGCTCTTGCATTACTCAAATTCTTCTGCCACTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.448940139
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017