Detail information of AT3G10030_circ_g.2


General Information
CircRNA Name AT3G10030_circ_g.2
ID in PlantcircBase ath_circ_020751
Alias NA
Organism Arabidpsis thaliana
Position chr3: 3092653-3093145  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G10030
Parent gene annotation AT3g10030/T22K18_15
Parent gene strand -
Alternative splicing AT3G10030_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G10030.1:2
AT3G10030.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACACCCTGAACCGATATTGCAGTTTGTAACCGTGCCTGCACCCCTATTTTCTCCAGGGACGAT
TGAAGTAAAGCAGAGTTCATCACAGACGCCATCATActggaatgctgttctcttcacaaaagtt
aagggccattgtatccattgacgtaagacctctagaagccaaatcttgaaatgatatgtgctca
aatgtcac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 407
Transcript exons: 3092653-3092823,3092910-3093145
CTGGAATGCTGTTCTCTTCACAAAAGTTAAGGGCCATTGTATCCATTGACGTAAGACCTCTAGA
AGCCAAATCTTGAAATGATATGTGCTCAAATGTCACGTTACTATCTTGTGAATGACAGTCATAA
ACACCATCAACGTTTGTTCCTTTCACCACTGCCTCCGCATTGATGTCTATAGCTCGAAGGGCTG
CAGATGCATCAGATGATAAAAGTGGATTTCCAAGCGTGGCACCGATGCCACCAAATATTACCAC
TCTTCCCTTATCTAGATGCCGGGTGGCTCGTTGACGATTGTAAGGCTCCCCGACACCCTGAACC
GATATTGCAGTTTGTAACCGTGCCTGCACCCCTATTTTCTCCAGGGACGATTGAAGTAAAGCAG
AGTTCATCACAGACGCCATCATA

Genomic sequence CTGGAATGCTGTTCTCTTCACAAAAGTTAAGGGCCATTGTATCCATTGACGTAAGACCTCTAGA
AGCCAAATCTTGAAATGATATGTGCTCAAATGTCACGTTACTATCTTGTGAATGACAGTCATAA
ACACCATCAACGTTTGTTCCTTTCACCACTGCCTCCGCATTGACTGATAACAAGAGATCTTAGG
TTACCACTTAGGACCAGTTACTAATGGAAAGAGAACAACACTAAGAGGAAGTAAGAGAGTTGTA
CTGTCTATAGCTCGAAGGGCTGCAGATGCATCAGATGATAAAAGTGGATTTCCAAGCGTGGCAC
CGATGCCACCAAATATTACCACTCTTCCCTTATCTAGATGCCGGGTGGCTCGTTGACGATTGTA
AGGCTCCCCGACACCCTGAACCGATATTGCAGTTTGTAACCGTGCCTGCACCCCTATTTTCTCC
AGGGACGATTGAAGTAAAGCAGAGTTCATCACAGACGCCATCATA
Conservation Information
Conserved circRNAs NA
PMCS 0.352122682
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017