Plant Circular RNA Database

Detail information of AT2G27920_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT2G27920_circ_g.2
					
						ID in PlantcircBase
						ath_circ_015259
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 11886305-11888596  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder
					
						Parent gene
						
							AT2G27920						
					
						Parent gene annotation
						
							Serine carboxypeptidase-like 51
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G27920_circ_g.1 						
					
						Support reads
						3
					
						Tissues
						leaf, aerial
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G27920.1:10
AT2G27920.3:10
AT2G27920.2:10

General Information
CircRNA Name	AT2G27920_circ_g.2
ID in PlantcircBase	ath_circ_015259
Alias	NA
Organism	Arabidpsis thaliana
Position	chr2: 11886305-11888596 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene	AT2G27920
Parent gene annotation	Serine carboxypeptidase-like 51
Parent gene strand	-
Alternative splicing	AT2G27920_circ_g.1
Support reads	3
Tissues	leaf, aerial
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G27920.1:10 AT2G27920.3:10 AT2G27920.2:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAAGATCGGCTTTCTTCAACCAAGTTGAGTTTCTGGGCTTGAGAAATGTGTCTAATGGTCCAAC
CTCCTGAAAATTCCCTATACCAACCCCTGAAGCTCCaaaatgaccagcaccaagaatccaataa
aaatggagatttttgtatgatttggtaaagcctcttgttgctctgtcactttcgcagaataatg
gctctctt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1082
Transcript exons: 11886305-11886437,11886687-11886739,11886876-11886926,11
887042-11887111,11887208-11887419,11887517-11887622,1188
7709-11887776,11887867-11887910,11888014-11888250,118884
89-11888596
AAAATGACCAGCACCAAGAATCCAATAAAAATGGAGATTTTTGTATGATTTGGTAAAGCCTCTT
GTTGCTCTGTCACTTTCGCAGAATAATGGCTCTCTTTCCATTTTCTTGAATTCTTCTAGCCCCT
CCCACCTGAGTTTGTGAACCCATGCTTCAGTTCCACTTGTTGAACAGATAACATCAAGTTGTCC
ATTATAGATGGTCACATCTACCCCCGTGGCAAGAAGCTCATCGACGTCTTCAATTACGGGTTTC
ATAAAAGCAGCCTCCATTGCTGTAAACACATCATCCGAATTGTTTCCCCATATGAGGTCGTTGG
GAATAATCTTGAGCTTCTTCTTAATAACGCCATTCATTAATTTATCAAGGTCTCCTTCAACATC
TTCTACGTCACTTAAACTTCTCATATCATTTAAATATCTTGAATACTTTTTTATTTTCTCTTCC
TTTTTGATTTTTAGACTCGTTGTGAGCGAGACAGGGTCCATACCAGTATCCAATAGAAAATTGT
AAAAATCGACGAAATTGGATTTGGAACTAATCAAGTTTTCGAGGTCCATCCATGTTTGCGTCGC
TCCAACGTATTCACCATTTTTAATTTGTGTTTTAATCTTCTCTGCTAAGCTATTAGAGCTATCC
AAGCCATTGTCATCAAGCCTAGAGACATGCTTGAGAAGAGGTCCCCATGAAAACACAAAATCTT
CAGGGGATATCCAACTATCTCCCAAAATCACTCCTCCAAGATGAAGCTTCAATTTGCCAGATTG
AACTGCGTCAATAACCGATAAACCGAGCTTAACCGCGATTTTGCCACCATAAGATTCAGCAACA
ATGAAGAGAGGGCTTTGGTTTAAAGTCTGGTTTTTGTTGAAGAGTTGTTGCAACAGTTTGGTCA
AATCTTGTGCTGCTTCTTCATCACTTTTCACATACAAATCCTTTTGATTGCCCTCCACGAAACT
GTACCCTGCCCCAACACAAACAAAAGATCGGCTTTCTTCAACCAAGTTGAGTTTCTGGGCTTGA
GAAATGTGTCTAATGGTCCAACCTCCTGAAAATTCCCTATACCAACCCCTGAAGCTCC
Transcript length: 1092
Transcript exons: 11886305-11886437,11886687-11886739,11886876-11886926,11
887042-11887111,11887208-11887419,11887517-11887622,1188
7709-11887776,11887867-11887910,11888014-11888260,118884
89-11888596
AAAATGACCAGCACCAAGAATCCAATAAAAATGGAGATTTTTGTATGATTTGGTAAAGCCTCTT
GTTGCTCTGTCACTTTCGCAGAATAATGGCTCTCTTTCCATTTTCTTGAATTCTTCTAGCCCCT
CCCACCTGAGTTTGTGAACCCATGCTTCAGTTCCACTTGTTGAACAGATAACATCAAGTTGTCC
ATTATAGATGGTCACATCTACCCCCGTGGCAAGAAGCTCATCGACGTCTTCAATTACGGGTTTC
ATAAAAGCAGCCTCCATTGCTGTAAACACATCATCCGAATTGTTTCCCCATATGAGGTCGTTGG
GAATAATCTTGAGCTTCTTCTTAATAACGCCATTCATTAATTTATCAAGGTCTCCTTCAACATC
TTCTACGTCACTTAAACTTCTCATATCATTTAAATATCTTGAATACTTTTTTATTTTCTCTTCC
TTTTTGATTTTTAGACTCGTTGTGAGCGAGACAGGGTCCATACCAGTATCCAATAGAAAATTGT
AAAAATCGACGAAATTGGATTTGGAACTAATCAAGTTTTCGAGGTCCATCCATGTTTGCGTCGC
TCCAACGTATTCACCATTTTTAATTTGTGTTTTAATCTTCTCTGCTAAGCTATTAGAGCTATCC
AAGCCATTGTCATCAAGCCTAGAGACATGCTTGAGAAGAGGTCCCCATGAAAACACAAAATCTT
CAGGGGATATCCAACTATCTCCCAAAATCACTCCTCCAAGATGAAGCTTCAATTTGCCAGATTG
AACTGCGTCAATAACCGATAAACCGAGCTTAACCGCGATTTTGCCACCATAAGATTCAGCAACA
ATGAAGAGAGGGCTTTGGTTTAAAGTCTGGTTTTTGTTGAAGAGTTGTTGCAACAGTTTGGTCA
AATCTTGTGCTGCTTCTTCATCACTTTTCACATACAAATCCTTTTGATTGCCCTCCACGAAACT
GTACCCTGCCCCAACTGGACTATCCACAAACAAAAGATCGGCTTTCTTCAACCAAGTTGAGTTT
CTGGGCTTGAGAAATGTGTCTAATGGTCCAACCTCCTGAAAATTCCCTATACCAACCCCTGAAG
CTCC
						
					

						Genomic sequence
						
							AAAATGACCAGCACCAAGAATCCAATAAAAATGGAGATTTTTGTATGATTTGGTAAAGCCTCTT
GTTGCTCTGTCACTTTCGCAGAATAATGGCTCTCTTTCCATTTTCTTGAATTCTTCTAGCCCCT
CCCACCTTACACATAATCATCATCATTATCATGTAATGACAAATTTATATACCAACAACCTATC
TTTTTTATAATTAATACCAACAATATTCGTTGAGTGATTTAATATTGTTCTCTATTTATTACAA
TAGTGTGCCTATATTCAGTAAGTATTTTGGATTCTATTTTCATAATGAGGATACACTATATTCT
TATTTATAGAATGATGATGTAATGTAATGTAACTAAACTTAGAAAAAGTAGATTGGTCTTACCT
GAGTTTGTGAACCCATGCTTCAGTTCCACTTGTTGAACAGATAACATCAAGCTGCGTATATAAA
CCACATGTCAATTTATCTCATTCTTTAGATTCATATTTCAAGTTGCAATTATGCAAATGATTTC
TTATCTTTCATATTAATCAACTATATAATTTGTTTTCTTATAAATAATGATGGTCTTACTTGTC
CATTATAGATGGTCACATCTACCCCCGTGGCAAGAAGCTCATCGACCTGCCAAAAAAAAACAAT
TTATTTTGTATTAACGAATCAAACTAATTTAAATAGTTTTTTTTTATAATTAAACTAATTTAAA
CGGTTTATATATTTTTTTAAAAAGAATTATTACGTCTTCAATTACGGGTTTCATAAAAGCAGCC
TCCATTGCTGTAAACACATCATCCGAATTGTTTCCCCATCTGTTAATTTTTACAAAACCAAAAT
ATAACACATTTAACAACTAAACTTTGATTATATTAAAGTTTGATACTATAAAAGAGTAAGAGGT
TACTTACATGAGGTCGTTGGGAATAATCTTGAGCTTCTTCTTAATAACGCCATTCATTAATTTA
TCAAGGTCTCCTTCAACATCTTCTACGTCACTTAAACTTCTCATATCATTTAAATATCTTGAAT
ACTTTTTTATTTTCTCTTCCTTTTTGATTTTTAGACTCGTTGTGAGCGAGACAGGGTCCATACC
AGTATCCAATAGAAAATTGTAAAAATCCTACATTAAAACCAACATGTAAAATACTCACTTTATC
ATCAAATCTTTATAATTGTACATACTAATGGATTTAAAAATAAGAGGAGAAATAATTTACGACG
AAATTGGATTTGGAACTAATCAAGTTTTCGAGGTCCATCCATGTTTGCGTCGCTCCAACGTATT
CACCATTTTTAATTTGTGTTTTAATCTTCTCTGCTAAGCTGCTCCAAAAAAAAGTAAACTATAT
AGATTAGAGAGGTAAATTAATTACGTATTAGAAAAATTGATTTTGTATTAAGATAAAGACCTAT
TAGAGCTATCCAAGCCATTGTCATCAAGCCTAGAGACATGCTTGAGAAGAGGTCCCCATGAAAA
CTGTAACAATTAATCAATAAAAATCATATGAATATAATTTAATCACAAATAAATAAGAGTAACA
TGTTTTAAAAAAATGATGAAACTCACCACAAAATCTTCAGGGGATATCCAACTATCTCCCAAAA
TCACTCCTAATCACACATATTATAAAATAGAATTATTTGTCTACTACATTATTAGTTTCATTTT
ATTCAGAGAAAAAAAGAAAATAAAGAAAGCACGTAATCCCTTTACCTCCAAGATGAAGCTTCAA
TTTGCCAGATTGAACTGCGTCAATAACCGATAAACCGAGCTTAACCGCGATTTTGCCACCATAA
GATTCAGCAACAATGAAGAGAGGGCTTTGGTTTAAAGTCTGGTTTTTGTTGAAGAGTTGTTGCA
ACAGTTTGGTCAAATCTTGTGCTGCTTCTTCATCACTTTTCACATACAAATCCTTTTGATTGCC
CTCCACGAAACTGTACCCTGCCCCAACTGGACTATCCTTTATTTTCAAGAAAAATATATATATA
ATCGATTAAAAACTTAACATATGTGAGTAAGCTTAAAGACTGATCAAATTAGATACCACGTAAA
AGTAATTAATTACACACTTTTGAAAACAAAATTTTGTTTTACTCTATATCAAAGAAGAATGATA
GTATTATTGTTTTTTTTTTGTTAATAATAATATTGGTGGAAATAAAAGTAAACATGAAAACGAA
AAAAATACCACAAACAAAAGATCGGCTTTCTTCAACCAAGTTGAGTTTCTGGGCTTGAGAAATG
TGTCTAATGGTCCAACCTCCTGAAAATTCCCTATACCAACCCCTGAAGCTCC
						
					

			
		

Sequences
Splice junction sequence	AAAGATCGGCTTTCTTCAACCAAGTTGAGTTTCTGGGCTTGAGAAATGTGTCTAATGGTCCAAC CTCCTGAAAATTCCCTATACCAACCCCTGAAGCTCCaaaatgaccagcaccaagaatccaataa aaatggagatttttgtatgatttggtaaagcctcttgttgctctgtcactttcgcagaataatg gctctctt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1082 Transcript exons: 11886305-11886437,11886687-11886739,11886876-11886926,11 887042-11887111,11887208-11887419,11887517-11887622,1188 7709-11887776,11887867-11887910,11888014-11888250,118884 89-11888596 AAAATGACCAGCACCAAGAATCCAATAAAAATGGAGATTTTTGTATGATTTGGTAAAGCCTCTT GTTGCTCTGTCACTTTCGCAGAATAATGGCTCTCTTTCCATTTTCTTGAATTCTTCTAGCCCCT CCCACCTGAGTTTGTGAACCCATGCTTCAGTTCCACTTGTTGAACAGATAACATCAAGTTGTCC ATTATAGATGGTCACATCTACCCCCGTGGCAAGAAGCTCATCGACGTCTTCAATTACGGGTTTC ATAAAAGCAGCCTCCATTGCTGTAAACACATCATCCGAATTGTTTCCCCATATGAGGTCGTTGG GAATAATCTTGAGCTTCTTCTTAATAACGCCATTCATTAATTTATCAAGGTCTCCTTCAACATC TTCTACGTCACTTAAACTTCTCATATCATTTAAATATCTTGAATACTTTTTTATTTTCTCTTCC TTTTTGATTTTTAGACTCGTTGTGAGCGAGACAGGGTCCATACCAGTATCCAATAGAAAATTGT AAAAATCGACGAAATTGGATTTGGAACTAATCAAGTTTTCGAGGTCCATCCATGTTTGCGTCGC TCCAACGTATTCACCATTTTTAATTTGTGTTTTAATCTTCTCTGCTAAGCTATTAGAGCTATCC AAGCCATTGTCATCAAGCCTAGAGACATGCTTGAGAAGAGGTCCCCATGAAAACACAAAATCTT CAGGGGATATCCAACTATCTCCCAAAATCACTCCTCCAAGATGAAGCTTCAATTTGCCAGATTG AACTGCGTCAATAACCGATAAACCGAGCTTAACCGCGATTTTGCCACCATAAGATTCAGCAACA ATGAAGAGAGGGCTTTGGTTTAAAGTCTGGTTTTTGTTGAAGAGTTGTTGCAACAGTTTGGTCA AATCTTGTGCTGCTTCTTCATCACTTTTCACATACAAATCCTTTTGATTGCCCTCCACGAAACT GTACCCTGCCCCAACACAAACAAAAGATCGGCTTTCTTCAACCAAGTTGAGTTTCTGGGCTTGA GAAATGTGTCTAATGGTCCAACCTCCTGAAAATTCCCTATACCAACCCCTGAAGCTCC Transcript length: 1092 Transcript exons: 11886305-11886437,11886687-11886739,11886876-11886926,11 887042-11887111,11887208-11887419,11887517-11887622,1188 7709-11887776,11887867-11887910,11888014-11888260,118884 89-11888596 AAAATGACCAGCACCAAGAATCCAATAAAAATGGAGATTTTTGTATGATTTGGTAAAGCCTCTT GTTGCTCTGTCACTTTCGCAGAATAATGGCTCTCTTTCCATTTTCTTGAATTCTTCTAGCCCCT CCCACCTGAGTTTGTGAACCCATGCTTCAGTTCCACTTGTTGAACAGATAACATCAAGTTGTCC ATTATAGATGGTCACATCTACCCCCGTGGCAAGAAGCTCATCGACGTCTTCAATTACGGGTTTC ATAAAAGCAGCCTCCATTGCTGTAAACACATCATCCGAATTGTTTCCCCATATGAGGTCGTTGG GAATAATCTTGAGCTTCTTCTTAATAACGCCATTCATTAATTTATCAAGGTCTCCTTCAACATC TTCTACGTCACTTAAACTTCTCATATCATTTAAATATCTTGAATACTTTTTTATTTTCTCTTCC TTTTTGATTTTTAGACTCGTTGTGAGCGAGACAGGGTCCATACCAGTATCCAATAGAAAATTGT AAAAATCGACGAAATTGGATTTGGAACTAATCAAGTTTTCGAGGTCCATCCATGTTTGCGTCGC TCCAACGTATTCACCATTTTTAATTTGTGTTTTAATCTTCTCTGCTAAGCTATTAGAGCTATCC AAGCCATTGTCATCAAGCCTAGAGACATGCTTGAGAAGAGGTCCCCATGAAAACACAAAATCTT CAGGGGATATCCAACTATCTCCCAAAATCACTCCTCCAAGATGAAGCTTCAATTTGCCAGATTG AACTGCGTCAATAACCGATAAACCGAGCTTAACCGCGATTTTGCCACCATAAGATTCAGCAACA ATGAAGAGAGGGCTTTGGTTTAAAGTCTGGTTTTTGTTGAAGAGTTGTTGCAACAGTTTGGTCA AATCTTGTGCTGCTTCTTCATCACTTTTCACATACAAATCCTTTTGATTGCCCTCCACGAAACT GTACCCTGCCCCAACTGGACTATCCACAAACAAAAGATCGGCTTTCTTCAACCAAGTTGAGTTT CTGGGCTTGAGAAATGTGTCTAATGGTCCAACCTCCTGAAAATTCCCTATACCAACCCCTGAAG CTCC
Genomic sequence	AAAATGACCAGCACCAAGAATCCAATAAAAATGGAGATTTTTGTATGATTTGGTAAAGCCTCTT GTTGCTCTGTCACTTTCGCAGAATAATGGCTCTCTTTCCATTTTCTTGAATTCTTCTAGCCCCT CCCACCTTACACATAATCATCATCATTATCATGTAATGACAAATTTATATACCAACAACCTATC TTTTTTATAATTAATACCAACAATATTCGTTGAGTGATTTAATATTGTTCTCTATTTATTACAA TAGTGTGCCTATATTCAGTAAGTATTTTGGATTCTATTTTCATAATGAGGATACACTATATTCT TATTTATAGAATGATGATGTAATGTAATGTAACTAAACTTAGAAAAAGTAGATTGGTCTTACCT GAGTTTGTGAACCCATGCTTCAGTTCCACTTGTTGAACAGATAACATCAAGCTGCGTATATAAA CCACATGTCAATTTATCTCATTCTTTAGATTCATATTTCAAGTTGCAATTATGCAAATGATTTC TTATCTTTCATATTAATCAACTATATAATTTGTTTTCTTATAAATAATGATGGTCTTACTTGTC CATTATAGATGGTCACATCTACCCCCGTGGCAAGAAGCTCATCGACCTGCCAAAAAAAAACAAT TTATTTTGTATTAACGAATCAAACTAATTTAAATAGTTTTTTTTTATAATTAAACTAATTTAAA CGGTTTATATATTTTTTTAAAAAGAATTATTACGTCTTCAATTACGGGTTTCATAAAAGCAGCC TCCATTGCTGTAAACACATCATCCGAATTGTTTCCCCATCTGTTAATTTTTACAAAACCAAAAT ATAACACATTTAACAACTAAACTTTGATTATATTAAAGTTTGATACTATAAAAGAGTAAGAGGT TACTTACATGAGGTCGTTGGGAATAATCTTGAGCTTCTTCTTAATAACGCCATTCATTAATTTA TCAAGGTCTCCTTCAACATCTTCTACGTCACTTAAACTTCTCATATCATTTAAATATCTTGAAT ACTTTTTTATTTTCTCTTCCTTTTTGATTTTTAGACTCGTTGTGAGCGAGACAGGGTCCATACC AGTATCCAATAGAAAATTGTAAAAATCCTACATTAAAACCAACATGTAAAATACTCACTTTATC ATCAAATCTTTATAATTGTACATACTAATGGATTTAAAAATAAGAGGAGAAATAATTTACGACG AAATTGGATTTGGAACTAATCAAGTTTTCGAGGTCCATCCATGTTTGCGTCGCTCCAACGTATT CACCATTTTTAATTTGTGTTTTAATCTTCTCTGCTAAGCTGCTCCAAAAAAAAGTAAACTATAT AGATTAGAGAGGTAAATTAATTACGTATTAGAAAAATTGATTTTGTATTAAGATAAAGACCTAT TAGAGCTATCCAAGCCATTGTCATCAAGCCTAGAGACATGCTTGAGAAGAGGTCCCCATGAAAA CTGTAACAATTAATCAATAAAAATCATATGAATATAATTTAATCACAAATAAATAAGAGTAACA TGTTTTAAAAAAATGATGAAACTCACCACAAAATCTTCAGGGGATATCCAACTATCTCCCAAAA TCACTCCTAATCACACATATTATAAAATAGAATTATTTGTCTACTACATTATTAGTTTCATTTT ATTCAGAGAAAAAAAGAAAATAAAGAAAGCACGTAATCCCTTTACCTCCAAGATGAAGCTTCAA TTTGCCAGATTGAACTGCGTCAATAACCGATAAACCGAGCTTAACCGCGATTTTGCCACCATAA GATTCAGCAACAATGAAGAGAGGGCTTTGGTTTAAAGTCTGGTTTTTGTTGAAGAGTTGTTGCA ACAGTTTGGTCAAATCTTGTGCTGCTTCTTCATCACTTTTCACATACAAATCCTTTTGATTGCC CTCCACGAAACTGTACCCTGCCCCAACTGGACTATCCTTTATTTTCAAGAAAAATATATATATA ATCGATTAAAAACTTAACATATGTGAGTAAGCTTAAAGACTGATCAAATTAGATACCACGTAAA AGTAATTAATTACACACTTTTGAAAACAAAATTTTGTTTTACTCTATATCAAAGAAGAATGATA GTATTATTGTTTTTTTTTTGTTAATAATAATATTGGTGGAAATAAAAGTAAACATGAAAACGAA AAAAATACCACAAACAAAAGATCGGCTTTCTTCAACCAAGTTGAGTTTCTGGGCTTGAGAAATG TGTCTAATGGTCCAACCTCCTGAAAATTCCCTATACCAACCCCTGAAGCTCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.183418217

Conservation Information
Conserved circRNAs	NA
PMCS	0.183418217

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11887559-11886307(-)
						
						Potential amino acid sequence
						
							MDLENLISSKSNFVDFYNFLLDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLSDVEDVEGD
LDKLMNGVIKKKLKIIPNDLIWGNNSDDVFTAMEAAFMKPVIEDVDELLATGVDVTIYNGQLDV
ICSTSGTEAWVHKLRWEGLEEFKKMEREPLFCESDRATRGFTKSYKNLHFYWILGAGHFGASGV
GIGNFQEVGPLDTFLKPRNSTWLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKL
LQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVIDAVQSGKLKLHLGGVILGDSWISPEDFV
FSWGPLLKHVSRLDDNGLDSSNSLAEKIKTQIKNGEYVGATQTWMDLENLISSKSNFVDFYNFL
LDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLSDVEDVEGDLDKLMNGVIKKKLKIIPNDL
IWGNNSDDVFTAMEAAFMKPVIEDVDELLATGVDVTIYNGQLDVICSTSGTEAWVHKLRWEGLE
EFKKMEREPLFCESDRATRGFTKSYKNLHFYWILGAGHFGASGVGIGNFQEVGPLDTFLKPRNS
TWLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVA
ESYGGKIAVKLGLSVIDAVQSGKLKLHLGGVILGDSWISPEDFVFSWGPLLKHVSRLDDNGLDS
SNSLAEKIKTQIKNGEYVGATQTWMDLENLISSKSNFVDFYNFLLDTGMDPVSLTTSLKIKKEE
KIKKYSRYLNDMRSLSDVEDVEGDLDKLMNGVIKKKLKIIPNDLIWGNNSDDVFTAMEAAFMKP
VIEDVDELLATGVDVTIYNGQLDVICSTSGTEAWVHKLRWEGLEEFKKMEREPLFCESDRATRG
FTKSYKNLHFYWILGAGHFGASGVGIGNFQEVGPLDTFLKPRNSTWLKKADLLFVDSPVGAGYS
FVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVIDAVQ
SGKLKLHLGGVILGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSLAEKIKTQIKNGEYVGA
TQTWMDLENLISSKSNFVDFYNFLLDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLSDVED
VEGDLDKLMNGVIKKKLKIIPNDLIWGNNSDDVFTAMEAAFMKPVIEDVDELLATGVDVTIYNG
QLDVICSTSGTEAWVHKLRWEGLEEFKKMEREPLFCESDRATRGFTKSYKNLHFYWILGAGHF(
-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11887559-11886307(-)
Potential amino acid sequence	MDLENLISSKSNFVDFYNFLLDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLSDVEDVEGD LDKLMNGVIKKKLKIIPNDLIWGNNSDDVFTAMEAAFMKPVIEDVDELLATGVDVTIYNGQLDV ICSTSGTEAWVHKLRWEGLEEFKKMEREPLFCESDRATRGFTKSYKNLHFYWILGAGHFGASGV GIGNFQEVGPLDTFLKPRNSTWLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKL LQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVIDAVQSGKLKLHLGGVILGDSWISPEDFV FSWGPLLKHVSRLDDNGLDSSNSLAEKIKTQIKNGEYVGATQTWMDLENLISSKSNFVDFYNFL LDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLSDVEDVEGDLDKLMNGVIKKKLKIIPNDL IWGNNSDDVFTAMEAAFMKPVIEDVDELLATGVDVTIYNGQLDVICSTSGTEAWVHKLRWEGLE EFKKMEREPLFCESDRATRGFTKSYKNLHFYWILGAGHFGASGVGIGNFQEVGPLDTFLKPRNS TWLKKADLLFVDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVA ESYGGKIAVKLGLSVIDAVQSGKLKLHLGGVILGDSWISPEDFVFSWGPLLKHVSRLDDNGLDS SNSLAEKIKTQIKNGEYVGATQTWMDLENLISSKSNFVDFYNFLLDTGMDPVSLTTSLKIKKEE KIKKYSRYLNDMRSLSDVEDVEGDLDKLMNGVIKKKLKIIPNDLIWGNNSDDVFTAMEAAFMKP VIEDVDELLATGVDVTIYNGQLDVICSTSGTEAWVHKLRWEGLEEFKKMEREPLFCESDRATRG FTKSYKNLHFYWILGAGHFGASGVGIGNFQEVGPLDTFLKPRNSTWLKKADLLFVDSPVGAGYS FVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGGKIAVKLGLSVIDAVQ SGKLKLHLGGVILGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSLAEKIKTQIKNGEYVGA TQTWMDLENLISSKSNFVDFYNFLLDTGMDPVSLTTSLKIKKEEKIKKYSRYLNDMRSLSDVED VEGDLDKLMNGVIKKKLKIIPNDLIWGNNSDDVFTAMEAAFMKPVIEDVDELLATGVDVTIYNG QLDVICSTSGTEAWVHKLRWEGLEEFKKMEREPLFCESDRATRGFTKSYKNLHFYWILGAGHF( -)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT2G27920_circ_g.2

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