Detail information of BGIOSGA027084_circ_g.2


General Information
CircRNA Name BGIOSGA027084_circ_g.2
ID in PlantcircBase osi_circ_017852
Alias Chr08:17970412_17971094(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 18063263-18063945  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA027084
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA027084_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA027084-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTGATTATCTTACCTCCCTCTGGAGAGCCTCATCAAGCTCCTGTTTATCATCTGGTGTGATA
TCCTTTGAGTATAGTTGAACCAAACAATTCCTTATCcctcaaacatgagatcctcaatttgcga
gcagtataaatttgaagccatcattctagcaagcaagcatacatcccttgtgacttctggtgtc
actcttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAAACATGAGATCCTCAATTTGCGAGCAGTATAAATTTGAAGCCATCATTCTAGCAAGCAA
GCATACATCCCTTGTGACTTCTGGTGTCACTCTTGGATTTCCTAAATTGGTGCAATGCACAAAA
TTATTAAATGCACAAGAACTGAACTATACAGAAGTCAAAAGCCATCCTTTGCATACCATCACGG
TCTCCTCCCATCCAAGAAGAGAACTGAATGAGAGGTGCATTATAAGGAACACGCTCATCAATTC
CGATGTTCTTCAAGGCAGTGTCCAGACGGCGTAAGAACTTCGGAACACCTTTCCAGATTGTCTC
ATGAAAGTAACTCATACCAGCCCTCATTTCATCTTGAGGAGTTGGCTGGGTTCTTCGGATCTCA
TCAGTTCTAAAGGCTGCTTGAATCTGAAAAATAAGAACATGTTCTGATTCACCTTATTAATGCA
TTAATAAATTTAGTTGGAGCACAAAATCTGGCATGTTGAGCATCATGCTGAAAGTAATTATAAT
TTCTATAAATAATCGAAAAGGCACATACAATTTGAAAAAAAAAATCAAGACTATAAATGAGTCA
GTGATTAACTTGATTATCTTACCTCCCTCTGGAGAGCCTCATCAAGCTCCTGTTTATCATCTGG
TGTGATATCCTTTGAGTATAGTTGAACCAAACAATTCCTTATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021