Detail information of BGIOSGA009298_circ_ag.1


General Information
CircRNA Name BGIOSGA009298_circ_ag.1
ID in PlantcircBase osi_circ_004422
Alias 2:37256934|37261905
Organism Oryza sativa ssp. indica
Position chr2: 37256934-37261905  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA005357_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGATAGAAGATAAAATGTCCATGTCAAGACTGCTGCAGAGGTCTCATGGCCAGCAATGAGCAT
TGTCATCAGATCATCACGGAGTTGCTTGCTGGAGACcttccggtgccgggcatcgacgttcatg
gacgggagcctccggctagagatcgacgagaaccctgaagccatcatctccggtgagtggccgg
agaacttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCGGTGCCGGGCATCGACGTTCATGGACGGGAGCCTCCGGCTAGAGATCGACGAGAACCCT
GAAGCCATCATCTCCGGTGAGTGGCCGGAGAACTTCTCCCTGCTCAGCTACGACGATCTCCGCG
CCTACCTCCAGTCACAGGAGGCCGCTGCTCAAGCCGACAACCAGGTGCACTGATCACACCATAT
ATACATAGATTCTTCTTCTTCAGATCACCAACTGTCGATCTTCTTCTTAAGATCTTGCTAAACT
CTGAACTGGTTGCATGGTTGGTGAATTGACCAGCGTGTGGCGCTCCTGAGTGAAGCCATGTCGG
CGCCTGTGCTGGTAGCCACTGCCGAGCAGACGCTGGAGGAGGTTGAGTGCCACTTTGAGACGGT
CTCAGGTCTCCCAGTTATAGATGCCAGCCTCAGATGTGTTGGAGTGATCGTCAAGAGTGACCGG
GCCAGGGCTTCTCATGGGGTCAGCTCTCTTTCTCCTCTCACACACACATACATGATACATATCC
CTCTCACTCACGCACATACTCAACAACAAAAATAAGTGCTGATCTATTGCTTCTTGTAACAGTC
AAAGACGAAGATTGCAGAAGTGATGACCTCTCCAGCCATCACTCTACCATCTGACAAAACAGTA
ATGGGTAATCCATCGTTGTTTTCGCCCTTATTTTTTTTGGTTATTTTCCACTTAGCTACCAGTT
AAGCTAACAAGGCATATGCAATGTCTACAGATGCGGCAGCTCTGATGCTAAAGAAGAAGATCCA
CAGATTACCAATTGTAAATCAGGACAGACAAGTGATAGGTGAGTTTTGAGCAGTGGCCAATACA
GAAAAAAAAAAGGGCTTTCATTTTTTCCCCTTGATTTTATACCATCCTTAACATTGATAATTCA
GAGTATGTTGCATGCTAAATGGAGTTCCAAACACTATTAACAGGTATAGTTACCCGTGCTGACG
TTCTTCGCGAGTTGGAAGCCCTGCTGGAGGTTTAGACGTGCAGTGGTCCATATGCTTCGGCCTT
GTTGTATATATGTAAATATATGCCATGGTGTTTTTGAATAGCAGGCATCTCTAATCTGTAAGAG
TGTTGTAGCGCGAATCACCAAGATAAGCCTGAGAAAATAACCGGAGAGCTTTTCTTTGTACAAT
AAGCACACTATGAGACCTCCAGTGTTGTATGCCTGTGAAAAAATTTACGTTAGTGAATGGTCTC
CACAACAACATAGATGAATGAATATGCCTAGTTATCTTTCAGAACAAAACCACCAAGGTGCTTC
AAAGATGGATATAAAAGTGACCTTATTGAAGTTTCATTGTCAGAGGATGCATAGAACAATAGGA
CTTAACAGAAGAAAATAGGAATGCCGATGCAAGAGATATGCCTATTCGGCTATTCCTTTGCCAC
TTCTGAGCACTAACAGGAAAGATGGAAATGTGTTATACCCAGAACCACAACAGGTCAATCAAGA
TAGATGGAAAAAAAAAATCAACAAACACCAATATCGAATGTGACAAATCTTTAGATAAAAAATG
AACCTAATATTATAAGCTGAAGGAACCGTAACTATTTCAATCTCAGGAAGACCCAAGGAGAAAG
AACATAATCAATCTGTATGTCGTGGCAATGCTGAGGCTGTCATAACTCAGATTCGAGTTGCTGA
GACTTGCCCTTGTTGATCTTCTCCTGAAGCAATACTAGCAGCAGAAATGGGCATTGATGTAGTA
GTACTCATGTTTTCTGGTGAATCAGAAATGACTTTCATCTCTAAGTTTGGGATTACAGGTGGCT
TTGTCCTCCGAGTAACAGTCATTTTCAACCCCTCAGTTGTGTGAATCGTTGCTCCAGTTGTCAT
CTCAACCTATCATATTGATACTTCACAGTGATTATCTGTATGTTGATAACTATGAAGAACCAGG
AAGCAGACAGAAATTATACCGGAGGAGCTCCTGGAGCCATTTGAAAATCAAAGCGCCTGACAAG
CATTGCAGTTGCCACCACAGTCTGCATACAAGTTCCGGCATATCCATGTTATTAGAGTTGGAAT
CTTGCATGCTCAATAGTTATTGTACTACATTATTTATCATGGCATGAGATATAATGTCCTTATG
GTAGACAACAGAAGGCTCAAGGCAACAAGGTTCAGTAAGACTGGACCATACATAAGTTTGCTAT
GTTTCCTTAAAATGACATTTTGAAATTAAAAGAAGAAATCCTTCAAAAACTAAAACAAATTACC
TCGAAAGTGGCAAACATGTCACCTACACATTTCCTTGGTCCGCCACCAAATGGCAAGTAACTGA
GAATTCAACAGAACACGTGAGTCCCATTTAGCTATGTAGATTCATCAAATATATTAAATTAGCC
AGTGAGGCAGTGACAGCTAACAGATGCTAGCCGCAATACACAGAATGAAAGCTACCACAGCCTA
AAATTGGAGCTTAAAAAGTTTGACATGCCAACTGAAAATCAATAATTTGGATGTTGTCTTGAAA
GAAAGATGTGTTCCGCAGTGAGTTCAATCTAAGCTGACAAAATAATGGGACATGTCATGTGCCA
AGTAAATGCAGATTACCATTTTTAAGTTTCAGTGTGATGCCTAGGAGACTTGCTGTACATTATA
GTTGATGATACGTTGGTTGTTTTTCAATTAACATGATTTGCAGGTCACAGGTTTTATGCCGTGC
ATCAACTCCCTGCAAGACTGCAACACGGAAGAAGTTTGTAGTCCAGTCGGAAGTCTTCATTAAC
TCAGGGATGGCACGAATTGTTACGTCTTCTAATCAAGTAAGGATTTTGTTCAAAGCACCTCTGA
TGTTTGTTGATTCATACAAAGGGTTCTGCTGTTGACATACTTGCTACAGGTAAGGAACTCATAC
GACATACTATCAGTTTATACAAAATTACTACTCCAAGTACTGTTTCTGCGTAACCAGTTAACAG
TTCTGGCGATGTGGTAAAGTTGAAAGTACTTTCAAGCACTATCAGTTTGAAAGTACAACAGCAT
TTTGGCACATGTTGCTTATAGCCATATGAATATTATTTTAACATGATTGTCATAAACTGTGGTT
TAGCTCCCAAAACCATAAATTTAGGAATCAAGTCATCACAGTTATCTCATCTTTACTGCTTCAA
AAGAAAAAGGTCCCATTTTTCTTTATGTTGTTGTGACTGCCTTATGCACTTTCTAAGATTGTGG
CTATGCACATGCCAGCATTAGCACTAAATTAATACGAATCACATGAAGAAAATTTGATGATTTG
CATCAAAGAAGAAAACGAAAATCAGCTAGAGTTTTTGTTTTTGTTATCTCTAGAATAATTACAA
CAGGTGCATCGCATGACCAAATAACTTAGTGTTAGTAGATGTAAAAACGCAAACTTCTCGTCAA
ACAAGAACACAACTATACCGAGCATAATCAAATGTCTACTGATTTTTGTAGTAGAAAGCAGAAA
CTAATAAAATGGGGGAATTAGAGTTATAAGGTGCATCCAAATAAAGAGCTAATGCATTTCATAG
CATTAATAGATATGGAACCTGAAATTTTGGTTTGTTTCATTTGGATTTGGTCCATCCAAAGGCC
ATCTTTCTGGATTAAAAACATCTGCACCATCCCAATGCTTTGGGCAATGATGTAGGTTCCACAC
GGATATGAAAATGTCTTCTCCCCTGGGAAACAAAGGGAAAAAATATCTTATCAGAATTATAGGT
GAAGTTCAAGTTTGTACTGAAATTTTTAAAAATGAACAGTTCAGACAATTAAATACTCTAGAGC
TACGACCAGAAATGGTATACAAGCAGAAGACAAAAATATATCACACAAGATTGGGAAGATATTC
TCTAAAAAAAGATTGGTTAGATAACTTATACTTGCACATATCTTAGGCCCTCTTTGTTTAGGCT
TATAAGCCAGCTTATGAGCTGAAAAGTCTAAGCCTAAACAAACAAACAGCTTTTTGTATGTTTT
TTTTAAAAGCCATAAACCACTACATAAACCACTGTTACACTATTAAGGCTCGGCGAACTGTTAC
ACTATTAAGACAAAAGCTAGGTTGGAAAAGGTTTTTGGGCTTATGTGAGATAGAGGTATGACTC
CACCATTAAACTCAGGACTTTAAATCCATTGATTTATAAATCATATAAGCCAAAAAAACTGACT
TAAAATACTAAACCAATAAACTTAAGCCTAAATAAAGAGGCCCTTAGACTCAGTTTCACCAGAA
CTTTACTGGTGTGATACTAGGCATGATCTTTCTGTTTTCCTATTCCAATTGTAACAACAGTCAA
CAGGGCTACAGGAGAGATTTCCTACACTTGAGAAATAAGTTCTGCTAGAGTTTTCTTTACCGGC
CAATTGGGTACCCTCCCAGCATATCCTCCTCAATAGAGCGACGAATTAAAACTGGTGGCTGTGG
ATAGAGTCTCAATGACTGCAAAAGTGGTGATTGAATGACATATTCATTCAGTGATCATACTCAT
TGTTTAATGAGGTAGCACTGTTTATCACTTACTTCGTTAATTACTCTAGTAGTATACTTCAATT
TCTTCACATCCTCAATTGTTGGTAAACGGTCACCTAGAACAGTATCAGCCTGTCCATAAGTGAG
TGAAACAAGTCATTTGCAACTTGTAAGATGTAGAAGCACGTGCCTCTAAAAATAACAATCCTAA
ATGTAAAAGCGAATTTACCTCATCTTGGAGTTTGGCCATTACATTTGGATACTGCAAGTTACCA
ATGCCAAGAAAGGTAAAACATGAGTGGTTTGACGTATACAATATTCATCATTACATATTGCTAC
ATTAATACATCAATGATTTGAGTTGCTGAACATATTTTCTTTTGGGAACAGCTACGGAACATAT
TGATACCTTAGATAGAAGATAAAATGTCCATGTCAAGACTGCTGCAGAGGTCTCATGGCCAGCA
ATGAGCATTGTCATCAGATCATCACGGAGTTGCTTGCTGGAGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021