Plant Circular RNA Database

Detail information of orai.007G267200_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.007G267200_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000761
					
						Alias
						Chr07:44792755|44793189
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr07: 44792755-44793189  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.007G267200						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						7/8
					
						Tissues
						leaf/ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.007G267200.3:2
Gorai.007G267200.1:2
Gorai.007G267200.2:2

General Information
CircRNA Name	orai.007G267200_circ_g.1
ID in PlantcircBase	gra_circ_000761
Alias	Chr07:44792755\|44793189
Organism	Gossypium raimondii
Position	chrChr07: 44792755-44793189 JBrowse»
Reference genome	Graimondii_221
Type	ue-circRNA
Identification method	CIRI
Parent gene	Gorai.007G267200
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	7/8
Tissues	leaf/ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.007G267200.3:2 Gorai.007G267200.1:2 Gorai.007G267200.2:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GTGAGTCCACCAGGTCTTGTGCAGATGTCACTTCTTTCATATTTGGTTGATTCCCCTTCTCCCA
CCACTTTTGAGTTTTACCAATAAGCCCAGTTTGCATcgtggcattggtgcagctaaagctgcat
agacgaccctgagctcctctatagaacctaaagaaaggcaacacatgtacattaaggctataac
acatggat

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 345
Transcript exons: 44792755-44792919,44793010-44793189
CGTGGCATTGGTGCAGCTAAAGCTGCATAGACGACCCTGAGCTCCTCTATAGAACCTAAAGAAA
GGCAACACATGTACATTAAGGCTATAACACATGGATTTATGCTCCTCATAGTTCACCTTAAGGA
ACTGCACATCCGGATTCATCTCTGCCAATTGGCAAATCTTGGGATGAAGAGCCTTGCAGCCACC
ACAACCAGGAGAGAAGAAATCCACTATAACAAGTTTATCCCCAGCATTCAAAAGTGAGTCCACC
AGGTCTTGTGCAGATGTCACTTCTTTCATATTTGGTTGATTCCCCTTCTCCCACCACTTTTGAG
TTTTACCAATAAGCCCAGTTTGCAT
						
						Genomic sequence
						
							CGTGGCATTGGTGCAGCTAAAGCTGCATAGACGACCCTGAGCTCCTCTATAGAACCTAAAGAAA
GGCAACACATGTACATTAAGGCTATAACACATGGATTTATGCTCCTCATAGTTCACCTTAAGGA
ACTGCACATCCGGATTCATCTCTGCCAATTGGCAAATCTGGCAAATCCCAACATCCAAATTCAC
CATTAGCACAACTATGCAAAAGAAAATAGATAAAAAAAACTTCAAAAGTCTATATTATTATACC
TTGGGATGAAGAGCCTTGCAGCCACCACAACCAGGAGAGAAGAAATCCACTATAACAAGTTTAT
CCCCAGCATTCAAAAGTGAGTCCACCAGGTCTTGTGCAGATGTCACTTCTTTCATATTTGGTTG
ATTCCCCTTCTCCCACCACTTTTGAGTTTTACCAATAAGCCCAGTTTGCAT

Sequences
Splice junction sequence	GTGAGTCCACCAGGTCTTGTGCAGATGTCACTTCTTTCATATTTGGTTGATTCCCCTTCTCCCA CCACTTTTGAGTTTTACCAATAAGCCCAGTTTGCATcgtggcattggtgcagctaaagctgcat agacgaccctgagctcctctatagaacctaaagaaaggcaacacatgtacattaaggctataac acatggat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 345 Transcript exons: 44792755-44792919,44793010-44793189 CGTGGCATTGGTGCAGCTAAAGCTGCATAGACGACCCTGAGCTCCTCTATAGAACCTAAAGAAA GGCAACACATGTACATTAAGGCTATAACACATGGATTTATGCTCCTCATAGTTCACCTTAAGGA ACTGCACATCCGGATTCATCTCTGCCAATTGGCAAATCTTGGGATGAAGAGCCTTGCAGCCACC ACAACCAGGAGAGAAGAAATCCACTATAACAAGTTTATCCCCAGCATTCAAAAGTGAGTCCACC AGGTCTTGTGCAGATGTCACTTCTTTCATATTTGGTTGATTCCCCTTCTCCCACCACTTTTGAG TTTTACCAATAAGCCCAGTTTGCAT
Genomic sequence	CGTGGCATTGGTGCAGCTAAAGCTGCATAGACGACCCTGAGCTCCTCTATAGAACCTAAAGAAA GGCAACACATGTACATTAAGGCTATAACACATGGATTTATGCTCCTCATAGTTCACCTTAAGGA ACTGCACATCCGGATTCATCTCTGCCAATTGGCAAATCTGGCAAATCCCAACATCCAAATTCAC CATTAGCACAACTATGCAAAAGAAAATAGATAAAAAAAACTTCAAAAGTCTATATTATTATACC TTGGGATGAAGAGCCTTGCAGCCACCACAACCAGGAGAGAAGAAATCCACTATAACAAGTTTAT CCCCAGCATTCAAAAGTGAGTCCACCAGGTCTTGTGCAGATGTCACTTCTTTCATATTTGGTTG ATTCCCCTTCTCCCACCACTTTTGAGTTTTACCAATAAGCCCAGTTTGCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							ghi_circ_000398* 						
					
						PMCS
						1.089949789

Conservation Information
Conserved circRNAs	ghi_circ_000398*
PMCS	1.089949789

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							44792763-44793128(-)
						
						Potential amino acid sequence
						
							MPRCKLGLLVKLKSGGRRGINQI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	44792763-44793128(-)
Potential amino acid sequence	MPRCKLGLLVKLKSGGRRGINQI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.007G267200_circ_g.1

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