Detail information of AT1G55750_circ_g.3


General Information
CircRNA Name AT1G55750_circ_g.3
ID in PlantcircBase ath_circ_007597
Alias 1:20841584-20841969
Organism Arabidpsis thaliana
Position chr1: 20841584-20841969  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G55750
Parent gene annotation Probable RNA polymerase II transcription factor B subunit 1-1
Parent gene strand -
Alternative splicing AT1G55750_circ_g.1 AT1G55750_circ_g.2
Support reads 1/3/2/2/1/2/2/2
Tissues seedling;root;leaf;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G55750.6:2
AT1G55750.2:2
AT1G55750.5:2
AT1G55750.4:2
AT1G55750.3:2
AT1G55750.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGTGGTGCTTGAAGATCCTCCATTCCTGCTACCCGGGACATTCTTTCCAATCTCTCCTGAT
TAGCGTCCTTGGTGGTTTCACCATCAGCTTTGCTTActcgaaagaaacttcaggcttaatcaac
ggatcacttaatcctgtagctctaatctctaaaatggattcctttagtaatccataagcttcat
ggacattt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 302
Transcript exons: 20841584-20841757,20841842-20841969
CTCGAAAGAAACTTCAGGCTTAATCAACGGATCACTTAATCCTGTAGCTCTAATCTCTAAAATG
GATTCCTTTAGTAATCCATAAGCTTCATGGACATTTCTCTTCAAGCCCTTTGCTCCTCTGGGTA
CATTGAGGACGTTTCCTTGTTGAGATTCAAAGTAATCACGAGGATCCTTGATAGAAAGCGGCGC
CAATGGGAAATTTTGTGGTGCTTGAAGATCCTCCATTCCTGCTACCCGGGACATTCTTTCCAAT
CTCTCCTGATTAGCGTCCTTGGTGGTTTCACCATCAGCTTTGCTTA

Genomic sequence CTCGAAAGAAACTTCAGGCTTAATCAACGGATCACTTAATCCTGTAGCTCTAATCTCTAAAATG
GATTCCTTTAGTAATCCATAAGCTTCATGGACATTTCTCTTCAAGCCCTTTGCTCCTCTGGGTA
CATTGAGGACGTTTCCTTGTTGAGATTCAAAGTAATCACGAGGATCCTGATTCCAAAGAAGAAA
GGGTAAGCGGATTAACGCAGCATCCATCATCAATTGTGAAAACCTTATATTGGCAGAAAGCCAA
ACCTTGATAGAAAGCGGCGCCAATGGGAAATTTTGTGGTGCTTGAAGATCCTCCATTCCTGCTA
CCCGGGACATTCTTTCCAATCTCTCCTGATTAGCGTCCTTGGTGGTTTCACCATCAGCTTTGCT
TA
Conservation Information
Conserved circRNAs NA
PMCS 0.432568489
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020