Detail information of BGIOSGA027958_circ_ig.1


General Information
CircRNA Name BGIOSGA027958_circ_ig.1
ID in PlantcircBase osi_circ_017916
Alias Chr08:2151568_2152543(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr8: 2237673-2238648  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCAGCTGCGGTTCATCCTCGTTGCCACCCAATCAACCACTGGAGCCGCATCCACGTCTTCCAT
CATGCTCGCCTGGATCTCGTGGCGGCGGCAGGGCTActtgaaagtcaaagctattcgggcattt
tgcaatcaaacggaacagctgcaccatccacttttgaaactcagattaggtttctcttgcaata
tgcatgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAAAGTCAAAGCTATTCGGGCATTTTGCAATCAAACGGAACAGCTGCACCATCCACTTTTG
AAACTCAGATTAGGTTTCTCTTGCAATATGCATGATCTCAAGGACCAAAGCCCCAACATCCCTG
CAGCCCCTTTTTATCTCAGGATTAGCATAAGCTCATTTTCAGCATATTTATGCCAATTTTTTTT
TTGAAGAGAATAGGCTTCGTTGCTATACAGACAAAACAAATAGTTGGATGTCAAAATTTGAGGC
CTGATTTTAGTCTTATTCTAACATGTATGACAAGTGCAATAACAGCATAAACACATAATCTTTT
AGAAAGATGCCATCTGATGTAAACAAAGGATGTCGTCAGTTTATTACTGTTTCAATGTAAAATG
ATCGTGAAAAACAACATGTATTATTTCTATTTCTTTTTCGGAACCAAAATATAAAAATTAATAA
GCTTCATCTCCAAATCTATCCAAACTAAAAGAAAAAATAGTTATATTAGATAACACAAAATGTA
GCTGTAGAACATCAGTCATACATATAAACAACATTAATATAAGTAATTAAGTAGCCATGTTTTC
AATCAAAAGTAGACCGCTTGACAAACCTTTCACCAATTTCTGGCCTAGAACAGACAAAGGGATG
CTGACACGCACCATATGGAGCTTAGGACGCTATAATCAGGAGTTCGTCTTGATCAAAGGCAAAA
CTCATGAAGTGTATTCACATCATTTGATGCTACATCATATCGATTTGGGGGTCAAATCTACTGG
AAAGCCACATGGAGCACCGCTCAAACGGAATTGCGTCATGGTGGTTAGCTGCTCGAAGGACTCG
TAGTCGTACCTTTAGCTAGTTGGTTGCGGTTGTGCATGGGTGCAGTCAGCTGCGGTTCATCCTC
GTTGCCACCCAATCAACCACTGGAGCCGCATCCACGTCTTCCATCATGCTCGCCTGGATCTCGT
GGCGGCGGCAGGGCTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021