Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os04g0611600_circ_g.1 |
| ID in PlantcircBase | osa_circ_025195 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr4: 31008612-31010593 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | ui-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os04g0611600 |
| Parent gene annotation |
Hypothetical protein. (Os04t0611600-00) |
| Parent gene strand | + |
| Alternative splicing | Os04g0611600_circ_g.2 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os04t0611500-01:5 Os04t0611500-01:5 Os04t0611600-00:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.232689564 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
31008701-31010590(+) 31010334-31008614(-) 31008696-31010580(-) |
| Potential amino acid sequence |
MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSATCRSLQTLVAVSTESNSTKPNPIETFLPFL MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSATCRSLQTLVAVSTESNSTKPNPIETFLPFL MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSATCRSLQTLVAVSTESNSTKPNPIETFLPFL MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSA(+) MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQVAENIARKNGISKSELLDREADD LAVRIALGETHVIAETKKYLSRSGVNVAALEELASKRNEKFKRSNHVILVKNLPYSSCEEDLAT MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQVAENIARKNGISKSELLDREADD LAVRIALGETHVIAETKKYLSRSGVNVAALEELASKRNEKFKRSNHVILVKNLPYSSCEEDLAT MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQVAENIARKNGISKSELLDREADD LAVRIALGETHVIAETKKYLSRSGVNVAALEELASKRNEKFKRSNHVILVKNLPYSSCEEDLAT MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQ(-) MARMFRWDLALLSSTQLKLQPVSARIYRLLKT*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |