Detail information of Os04g0611600_circ_g.1


General Information
CircRNA Name Os04g0611600_circ_g.1
ID in PlantcircBase osa_circ_025195
Alias NA
Organism Oryza sativa
Position chr4: 31008612-31010593  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os04g0611600
Parent gene annotation Hypothetical protein. (Os04t0611600-00)
Parent gene strand +
Alternative splicing Os04g0611600_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0611500-01:5
Os04t0611500-01:5
Os04t0611600-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGTCTCACCAAGAGCAATACGAACAGCAAGGTCATCTGCTTCTCTATCAAGTAATTCACTTTT
ACTGATTCCATTCTTCCTTGCTATGTTTTCAGCAACctgtagatccttgcagacactggttgca
gtttcaactgagtcgaactcaacaaagccaaatcccatcgaaacattcttgccattcttaatgt
gcttctta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 768
Transcript exons: 31008612-31008713,31008794-31008898,31009206-31009377,31
010007-31010071,31010270-31010593
CTGTAGATCCTTGCAGACACTGGTTGCAGTTTCAACTGAGTCGAACTCAACAAAGCCAAATCCC
ATCGAAACATTCTTGCCATTCTTAATGTGCTTCTTAACCGTTGCACTTTTAAGACTTCCACTCT
TCAATTTTGTGCTGAAATGCTGCTTCAAGGATTCATCCGATGTCTTGAAATTCAAATTCTTGAC
AAATACAGATCGCGACTCCACCCTGTCAGGATCAATCTCTTCAGCACTCACTCCTTCCACAGTT
TGCTCTACAATTGCTTTAGTAACAATCCTGTCACCAACAACATCCTTCTCATCATCTTCCACAG
GTGCTGAGGTGGGAGATAAAATATTTTCAGGTGCCCACTCCAAATACAGTGGAGTATCCTTGTA
TCTTGTGTACAGTAACTTTTTGAAAGCATGCCGAGCTTCTGTCGCTTCAACAAAAACTACCAAG
GCAAACACTCTGGTTGGAGGGAGGATGATTTTATCCAGGCTTCCATGTTTGCGAAACATTGTGG
CAAGATCTTCCTCACAAGAACTATATGGCAAGTTCTTTACCAATATCACATGGTTGCTTCTTTT
AAACTTCTCATTTCTTTTGGAAGCAAGCTCTTCCAGTGCAGCAACATTAACTCCAGACCTTGAT
AAATATTTCTTGGTCTCTGCAATGACATGTGTCTCACCAAGAGCAATACGAACAGCAAGGTCAT
CTGCTTCTCTATCAAGTAATTCACTTTTACTGATTCCATTCTTCCTTGCTATGTTTTCAGCAAC

Genomic sequence CTGTAGATCCTTGCAGACACTGGTTGCAGTTTCAACTGAGTCGAACTCAACAAAGCCAAATCCC
ATCGAAACATTCTTGCCATTCTTAATGTGCTTCTTAACCTGTAGAGATATCCAACAAAGATGTT
TGAGAATGAGATCTGGAAAACTCCATTCAATGCCCATAAGCATTGCAACCATACCGTTGCACTT
TTAAGACTTCCACTCTTCAATTTTGTGCTGAAATGCTGCTTCAAGGATTCATCCGATGTCTTGA
AATTCAAATTCTTGACAAATACAGATCGCGACTGCAATGGACAGTTGTGTGTTACTAAGATTTG
TAATTATTTGGGCCTAAAGCAAATAGATGATATTTAAAGGCTTGCACATGCAGCCACAAAAACT
CGCAGGCAGGTGCAACCACAAGAAAACACGAAACAGCCTCTAGCATCATACAGTAAAAGCGGTC
CAAGTATATAAGGAACACCGAGTGTTATTCAGACATGAACAGTTGAACACAAATGCCAAAATCC
AACTTGGACATGGCCACACGGGAGTCAGTGACAGTTAAGAGATGGTTATAATAAAGATTTAAGT
CAAGAGAAAGTTCCAAACCTCCACCCTGTCAGGATCAATCTCTTCAGCACTCACTCCTTCCACA
GTTTGCTCTACAATTGCTTTAGTAACAATCCTGTCACCAACAACATCCTTCTCATCATCTTCCA
CAGGTGCTGAGGTGGGAGATAAAATATTTTCAGGTGCCCACTCCAAATACAGTGGAGTATCCCT
GCAGTAAATAGTAACACCAACTTAGGAAATATACATGTGCAGATTTCACAATCACACTAATAGC
TAGAATTATATAACATTCACAAAAAGTCAGAATAATAAAACATAAAAAAAATAAACCATAAGGA
TGACAGGGTATAATTCCATAGAGAGCATATCGATCTATAACTAGAAAGCATTACAACACCCTTA
GATCAAATAGACTAAAATACAAGCATCAAGTATGAATATGCGTCTCTCATGCTACTAAAATACA
AGTATCAGATATGAATATGCATCTCTCTCTCTTGCGACATGCATGCCAGTGCAAATAGGATCTA
GCTGTATCAACGTCGATAATGGGTTTTTTCTTTCAGTTCCTAGGCAAACTTTAACTTAGATTAC
CAGGCACATGCATATGAAAAGTCGATTAAGAATGGAGAAAACAAACTAAAGAAAACCCCTCATT
CTTGAAGTAAATATCGATGGCTGCCTAATTTATTTAAAGAAAATATGTTAACTATCATGCATTA
TTCTATCTTAACAGAAAATTTACTACATTGATTTATCCTAAAAGCTCAATAAAACTGTATTCAA
ACTAGTCATTAAGAGTATTAGATGTGGACTAGCACTATTGCAGATACTTACTTGTATCTTGTGT
ACAGTAACTTTTTGAAAGCATGCCGAGCTTCTGTCGCTTCAACAAAAACTACCTGACATACAAA
CTCAAGGGGTGAAATTATTCGCAATACAGGTAATAATGTTCACTTGGTAATTTGTAGAGCAAAA
GAAATACAAAAGTGAAACATTCCAGACAGTAATGTAGGACACTCAAACACTCAAAAGTGTCATG
ATATAATGACCAATGACCAATGAACAATTGAACAAAATAAGCAGAAATAGTTACATACCAAGGC
AAACACTCTGGTTGGAGGGAGGATGATTTTATCCAGGCTTCCATGTTTGCGAAACATTGTGGCA
AGATCTTCCTCACAAGAACTATATGGCAAGTTCTTTACCAATATCACATGGTTGCTTCTTTTAA
ACTTCTCATTTCTTTTGGAAGCAAGCTCTTCCAGTGCAGCAACATTAACTCCAGACCTTGATAA
ATATTTCTTGGTCTCTGCAATGACATGTGTCTCACCAAGAGCAATACGAACAGCAAGGTCATCT
GCTTCTCTATCAAGTAATTCACTTTTACTGATTCCATTCTTCCTTGCTATGTTTTCAGCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.232689564
Functional Information
Coding potential Y
Potential coding position 31008701-31010590(+)
31010334-31008614(-)
31008696-31010580(-)
Potential amino acid sequence MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT
ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR
MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM
TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSATCRSLQTLVAVSTESNSTKPNPIETFLPFL
MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT
ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR
MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM
TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSATCRSLQTLVAVSTESNSTKPNPIETFLPFL
MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT
ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR
MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM
TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSATCRSLQTLVAVSTESNSTKPNPIETFLPFL
MCFLTVALLRLPLFNFVLKCCFKDSSDVLKFKFLTNTDRDSTLSGSISSALTPSTVCSTIALVT
ILSPTTSFSSSSTGAEVGDKIFSGAHSKYSGVSLYLVYSNFLKACRASVASTKTTKANTLVGGR
MILSRLPCLRNIVARSSSQELYGKFFTNITWLLLLNFSFLLEASSSSAATLTPDLDKYFLVSAM
TCVSPRAIRTARSSASLSSNSLLLIPFFLAMFSA(+)
MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV
EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS
GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQVAENIARKNGISKSELLDREADD
LAVRIALGETHVIAETKKYLSRSGVNVAALEELASKRNEKFKRSNHVILVKNLPYSSCEEDLAT
MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV
EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS
GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQVAENIARKNGISKSELLDREADD
LAVRIALGETHVIAETKKYLSRSGVNVAALEELASKRNEKFKRSNHVILVKNLPYSSCEEDLAT
MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV
EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS
GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQVAENIARKNGISKSELLDREADD
LAVRIALGETHVIAETKKYLSRSGVNVAALEELASKRNEKFKRSNHVILVKNLPYSSCEEDLAT
MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYTRYKDTPLYLEWAPENILSPTSAPV
EDDEKDVVGDRIVTKAIVEQTVEGVSAEEIDPDRVESRSVFVKNLNFKTSDESLKQHFSTKLKS
GSLKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCKDLQ(-)
MARMFRWDLALLSSTQLKLQPVSARIYRLLKT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017