Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018421_circ_g.2 |
ID in PlantcircBase | zma_circ_008838 |
Alias | zma_circ_0002017, GRMZM2G163200_C1 |
Organism | Zea mays |
Position | chr5: 220401548-220401869 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d018421 |
Parent gene annotation |
GATA transcription factor 8 |
Parent gene strand | + |
Alternative splicing | Zm00001d018421_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018421_T006:2 Zm00001d018421_T003:1 Zm00001d018421_T005:1 Zm00001d018421_T002:1 Zm00001d018421_T001:1 Zm00001d018421_T004:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.23233836 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
220401553-220401796(+) 220401752-220401796(+) 220401864-220401798(-) |
Potential amino acid sequence |
MAGGGFVEDMMREQSLLEATCGDLFDHIDDLLDFPNEDSAAAVLLLDAPAPGSPLSARIIDVGR AGNALAPPAAPAQHDASASAFFAAAGNDVFDTKDVVGAHIGSADGRRRIRGGHDEGAEPAGGDV RRPLRPHRRPPRLPQRGLRRRRAPPGRAGAREPAVGAHHRRRPRRQCARPACCPRAARRFR*(+ ) MRSPRLLPPRSTTLPLAPSSPPRGTMCSTPRTSSAHTSARQMAGGGFVEDMMREQSLLEATCGD LFDHIDDLLDFPNEDSAAAVLLLDAPAPGSPLSARIIDVGRAGNALAPPAAPAQHDASASAFFA AAGNDVFDTKDVVGAHIGSADGRRRIRGGHDEGAEPAGGDVRRPLRPHRRPPRLPQRGLRRRRA PPGRAGAREPAVGAHHRRRPRRQCARPACCPRAARRFR*(+) MCAPTTSLVSNTSFPAAAKKALAEASCCAGAAGGASALPARPTSMMRADSGLPGAGASRRSTAA AESSLGKSRRSSMWSKRSPHVASSRLCSLIMSSTNPPPAICRADVCADDVLGVEHIVPRGGEEG ASGSVVLRGGSRRGERIAGAADVDDARRQRAPGRRRVQEEHGGGGVLVGEVEEVVDVVEEVAAR RLQQALLPHHVLHESAACHLPSRCVRRRRPWCRTHRSPRRRRRR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |