Detail information of Csa2G370410_circ_g.2


General Information
CircRNA Name Csa2G370410_circ_g.2
ID in PlantcircBase csa_circ_001183
Alias Chr2:18210912_18214345
Organism Cucumis sativus
Position chrChr2: 18210912-18214345  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa2G370410
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa2G370410_circ_g.3
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa2G370410.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTATGTTCCCTACTATCTCAGCTACTCAGAGAGGCTGGCACTTCCTTTTTGGAGATACTGAAA
GTCGGTTTAACTATCTTCCTTTATGTTCCAATACAAggtgctattgaatccatatcagtaggtg
aaattaaattgagtttgcgccagtccttggtaaagcttggtgtggggtttatttctagggatcc
aaaacttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGCTATTGAATCCATATCAGTAGGTGAAATTAAATTGAGTTTGCGCCAGTCCTTGGTAAAGC
TTGGTGTGGGGTTTATTTCTAGGGATCCAAAACTTCAGATATTGATATGTGACTTAGAAGTTTG
CATGAGGCCTTCTAGTAAAGGTAGGCCAAAGTCGTCTAAGCCTCGGAGAACCCGCAGTTCAGGC
AGAGGAAAGTGGATGGTTGTAGCCAATATTGCTAGATATTTATCAGTTTCAATAACAGATTTGG
TTGTAAAGGTATGCAAAGTTCTGAGACTGGTGTTTGCAATGATTTTTATGATTTTTCAATTGAA
ACTCATGATTCTGAAAGTTATACATTTGGATCTATACGTTGTAGAACTGATTACTGTGACATTT
TGTCTTCTATTTGTATAAAATTTGGTTAATTTATTATGCTAATGGTTCTTTTTCCTTGTTTTTT
TTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTGTTCAATTGGATCTTGGAACACTGCAGACTCC
CAAAGCTACCGTTGAAGTTAAGGATTTTAGCATTGATATATCAAAAAATGGTGGAACAAGACCA
AATTTGTTTGTTAAGTTACAAATATTGCCTATATTTGTGCATATTGGTGAACCACGAGTTAGTT
GTGAACAGTCATCCAACCTAAGCAGTGGAGGATGTATATCTACTGTCAATTCATCTTTTGCCAC
TATGGAGAAATCTTCTGCTCCTTTTAGTTGTGAAGAATTCTCTTTATATGGTGAATTTGGTCAT
GACAGGTACTTTCTTTTGATTGTTTCCGTGGTGTTCGTTCTGCTTGAACAAACATGGGCCTTTT
TCTTACTAATTGTAGTTAGTCATTTGATAAGCATCTACCCTTTAACTCTATGACTATGACAATA
TCTTATCTTTTATGGTTTTGTCTTTTAGTTTATTTAATGTCCAGTAATAATCTCATTATCGTGA
TCTTGAATGCAGTTTATTTGGTAGAAAATTTACTTTTATTTATTGACATAGGGAAGCTGGTATA
ATTGTTAAGAACGTTGATGTCACCTTTGGGGAGGTCAATTTGAACTTGAATGAGGAGCTATTTT
CAAAAAGCAAAAAGGCGACAGACACTTCTTTTCCCTCTGAAGAAACAGTAGAGTCAACTGCTGA
TTCTCTCCCTGCTGTGAAGCTGCAGAAGAAGCCAGCACTTGCATCTCTTTCAAAATATACCTCT
GTTTTCCCAGAAAAGGTTGTGTTCTGATTCATTATTATGTATTTTTGTCTTGTTCAGATCAGTA
AGCATTTTAGTATTTGAGTAGTTTTCAGTTTCATTGCACTTCTCTATTTATTGAGCTATCCTTT
TAGAATATAAAGGTAGAGCGGGAGAGCAGTCCACTAGATTTTACTTCATATATAAACTAAGGAT
TTGATTATTTATGGTAGGAAATATTGTTCAGGAATCTAGGTCACGAGCCTTGTTTTGTTTTTGT
TTTTTGGTTTTTGTTTTTGTTTTTAATTTTTATTTTTCATTTTAATTTTGATAGAAAAAACTAA
CATTTTTTATAGATGCCTCTGTCCATTATTATTATTTTTATAAGAAACAGTACATTCATCAAAA
GAGCCACATGAGGAACCTAGGGATGTTTGTGGGTTGGGTTGAAGCACTTTTTAGATCCAACCTA
ATTGTTCGGGTTGTAATTTTCTTCAACTAAAATAAGCCTTATTGAATAATGAACCCCTTTGGGT
TGGGTTGGTTCGGGTTACTAGGATTATTTATTTAATTTTGTGTTCTGAAAATAAGTAAAATTTT
GTAAAAGATTTATTTAATTATTTTCATATATTGAATTAAGATTGACAACTCAATTTTAATTTAT
ATTATGAAAATTTTCTTTCCAAAGTGCCAAAAAGTTGTTTTTAAGGAGTTCTTGGAGGGTAAAT
TATCCAAAAAAATTATGAAATTAAATATAATTAAAATAAATGTGTATATAATTGTATCGTAAGT
AAAAAATATAAAATTTAAAATTAATAATAGGTTTGGGTTGTTTCGGACTGTTTTGGGTTATTTT
AGATGATCCAATGAACCAACTCAAACCATAGAAATTTTAGTTATTTTAACCTAACTGAACCCAA
ATGAGTTGATAACACCCAACTCAGACCGTTTAGGTTGGGTTGGGTTAATTGGGTTTTTCGGGTC
AAAGGGCAGATGCTTATCAAATGATTAAACTACAATTTGGAAATGAACGAGCTATCACTCTTTA
ACATTCAAAGAAATGATCCTATTTCTATCACTTGAGATTTCTATAAGATAATGGGATCGACATT
TTTCCTAACTAGTTTAAGCATCTTCTTGGACAACAATATCACTCTTTAACATTCAAGGGTTGAT
ATGTTGCTCTAGAGCTGTTGAAAATCATCTGTGCCCTTTTGATGTGGAAGATTCATGTTGTGAT
TAGGAGTTTGGATGTATGGCAAAAAGTTATCTTGTCCTTGATGAATGTTTGCAGCCCTGGTTTT
CTTTATTAGGAAAAAGATTATAACCATCCTTTCCTCATGGCCAATCATAATTTGATTCTGAGTA
GATGCATGGTTGGAGCAAAATAGAGGCCATGAGGCCCATGTCGTGCTTGATTTTCCTTCTTTCA
ACTCATACTTTAAGATACTTTCTCTCTCCGTCTCTCTCCCCTCTTTTTAATTTTTATAATTTTG
ATAGCAAGCCAAATTGATTGATAAATGAACCGATGAATATTGCATGTGCTTGTGAATGAGTTTG
ATTCTTTAGGCCTTGTTGATAACCATTTGATTTTTCAAAATTTTTCTTATTTGCTTCTCATACT
TCTTGACAATGGTTTTTATCTTTCCTAGAGAAATATTAGAATAACTACTTTTGTAGTATTCAAA
ACTTGACTTGGATTTTGAAACTCTTGAAAATAGATAACAAAACAAAGAAATTCATGGGTTAAAG
TAGTGTTTATAAGCCTATTTTATAAACTAGAACCCAAAGTCAAATAGTTAAGACATGACTTTAT
TTAGTTTTCTGGTTGCATTTATCACGGCACAGTGAATTTTATAGTGAAACTGATAAACGTGTGT
TCTTTGACAGGTTTCCTTCAGTCTTCCTAAACTGAATGTTATGTTTATGCATCGTGAGCATGAG
ATTGCTGTTGAAAACAACATCATGGGGATTCAATTTAGGATAATGAAATCACGCTGCTTAGAGG
ATTTAGGGGAGACTGCACGTCTTCATCTACAAATGGAGTTCAGTGAGATTCATGTATTGTTTAA
ACTTTTTTTGTTTTGGAAACTTGCAGCTCTCAGTTTAAATGTTTGTCATGTAGTTTGCTAAATA
TTTTTAACTATGTTCCCTACTATCTCAGCTACTCAGAGAGGCTGGCACTTCCTTTTTGGAGATA
CTGAAAGTCGGTTTAACTATCTTCCTTTATGTTCCAATACAA
Conservation Information
Conserved circRNAs NA
PMCS 0.098128875
Functional Information
Coding potential Y
Potential coding position 18211042-18214342(+)
Potential amino acid sequence MRPSSKGRPKSSKPRRTRSSGRGKWMVVANIARYLSVSITDLVVKTPKATVEVKDFSIDISKNG
GTRPNLFVKLQILPIFVHIGEPRVSCEQSSNLSSGGCISTVNSSFATMEKSSAPFSCEEFSLYG
EFGHDREAGIIVKNVDVTFGEVNLNLNEELFSKSKKATDTSFPSEETVESTADSLPAVKLQKKP
ALASLSKYTSVFPEKVSFSLPKLNVMFMHREHEIAVENNIMGIQFRIMKSRCLEDLGETARLHL
QMEFSEIHLLREAGTSFLEILKVGLTIFLYVPIQGAIESISVGEIKLSLRQSLVKLGVGFISRD
PKLQILICDLEVCMRPSSKGRPKSSKPRRTRSSGRGKWMVVANIARYLSVSITDLVVKTPKATV
EVKDFSIDISKNGGTRPNLFVKLQILPIFVHIGEPRVSCEQSSNLSSGGCISTVNSSFATMEKS
SAPFSCEEFSLYGEFGHDREAGIIVKNVDVTFGEVNLNLNEELFSKSKKATDTSFPSEETVEST
ADSLPAVKLQKKPALASLSKYTSVFPEKVSFSLPKLNVMFMHREHEIAVENNIMGIQFRIMKSR
CLEDLGETARLHLQMEFSEIHLLREAGTSFLEILKVGLTIFLYVPIQGAIESISVGEIKLSLRQ
SLVKLGVGFISRDPKLQILICDLEVCMRPSSKGRPKSSKPRRTRSSGRGKWMVVANIARYLSVS
ITDLVVKTPKATVEVKDFSIDISKNGGTRPNLFVKLQILPIFVHIGEPRVSCEQSSNLSSGGCI
STVNSSFATMEKSSAPFSCEEFSLYGEFGHDREAGIIVKNVDVTFGEVNLNLNEELFSKSKKAT
DTSFPSEETVESTADSLPAVKLQKKPALASLSKYTSVFPEKVSFSLPKLNVMFMHREHEIAVEN
NIMGIQFRIMKSRCLEDLGETARLHLQMEFSEIHLLREAGTSFLEILKVGLTIFLYVPIQGAIE
SISVGEIKLSLRQSLVKLGVGFISRDPKLQILICDLEVCMRPSSKGRPKSSKPRRTRSSGRGKW
MVVANIARYLSVSITDLVVKTPKATVEVKDFSIDISKNGGTRPNLFVKLQILPIFVHIGEPRVS
CEQSSNLSSGGCISTVNSSFATMEKSSAPFSCEEFSLYGEFGHDREAGIIVKNVDVTFGEVNLN
LNEELFSKSKKATDTSFPSEETVESTADSLPAVKLQKKPALASLSKYTSVFPEKVSFSLPKLNV
MFMHREHEIAVENNIMGIQFRIMKSRCLEDLGETARLHLQMEFSEIHLLREAGTSFLEILKVGL
TIFLYVPIQ
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019