Detail information of 4_circ_ag.4


General Information
CircRNA Name 4_circ_ag.4
ID in PlantcircBase ath_circ_032013
Alias NA
Organism Arabidpsis thaliana
Position chr4: 11482264-11486855  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G21585_circ_g.1 4_circ_ag.2 4_circ_ag.3 AT4G21600_circ_g.1
Support reads 10
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTGTTTGTTGTTACGTCTGTCTTAATATAGAACGGCTGGTCGAATGATGTTCCGTCGTGGAA
GTCATGTCACTTTCACCAAAAGGCCTGTCCAAATCTgtatgcttctgaaagcattgatcttgcc
tgcaagtatgcttacaggaacgccaccgcagggactactttaggaggtatacttactctctgag
gtttacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGCTTCTGAAAGCATTGATCTTGCCTGCAAGTATGCTTACAGGAACGCCACCGCAGGGACT
ACTTTAGGAGGTATACTTACTCTCTGAGGTTTACAAGATCAATAGTCACTCTGAAACAAAATCT
TCTTTAGCTTTCTAATATGCAACAATGCTTTAAAGTTCTTTTTCTCTCATATGTCTTTCTACAG
ATTACTATTTCGTCTCTCGGTTACCGGTGGTAGAGAAGAGACTTGCACAAGGCGGAATTCGCTT
GGCAGGGACTCTTAACCGAATATTTTCTGCAAAACGGAAGCTTGCTAGAGCATGAAAAAAGATC
CAGGAGAATCACTTGAACATCCATGAACACTCTTATGTATTAATAATGTGTAATGGTAGTAGTT
AAGGTTATGGTTTGGTATTGTTCCTGCGTTTTAACTATAATAAGTATGAAACGAAAACTGTACG
TCTACAAGAAAACATAGCATTTGACTTGAAAAATCAAACTTAACTAAACCAAAACCAAGATGTT
TGAATTTGAATCGAAAAATGAACTAAAACTAGCATAAAATCTTACTTGTTTTATCATTCATAAA
CCTGAAAAAAATAGAACCTAAGTGAAACTATAGTTTGAGTGCAAAAACAAAAATCTGATCATTC
AAATCGAAAAACCGTAAGCCAAAAAATTCGCATCAAGAAAAACACATTTCAATGAAATTACAAA
GTTTGATCACGATTCATGATGATAGATATCTTGGAGTCTGACATCCAAAAGAAGAGAAGGAAAC
AGAGCCAAGGTCAACTTGCCGGACACCAGAATCAGTTAATTAGATTCATTGGTAAAAAAACCCG
GCAAGTCATCCTTGGCTCAACCTCATTCTCTATTCTTCCATGCAAGACCCTCTGATACAACTAG
AGACTCTCATCATCGTAATCATCATTATCATGTTTTCTCTACCTTTCTTTTCTTGTCTTGTGAT
CTTGTCATACTCGTGATGAAGGTATTTATAGGCATATTGAAATGGGAAATGTGTGGATTAATTT
AATTGAAAATTCATATAATGTTATTATATGCAATAAATCCATGCATGGTTTTAAACTAGTAGTG
CATGCAAGCTACAAAATAAAATGGAATTTTGACCACAACCGTATATTGAAGAATATAATTACTT
TAAAAGATTGGCTGACCTTATATTATCAAATTCGAATAAGAATTTTATGTGAATAATATTCGTA
CTCTGAAGGCATCGACGCATCGTACTAGTGTGACATAAAAATCCACGTGTCGTATGTTTCTTAG
GATTGGAATCATAGTCTTGTGTGGGGTTGATCAACAAAAGGTGTTATCGATTGTCGTAGAAACA
ATTTAGAAAGATTCTTTATAAATAGTCTTTTTAAAAACATTGCCACAAATTTCAAATGTTGCGG
ATAAAATGGAATATATATTGAAAATTTCAGATTGTCCTTTGGGTTGAGAATATATCATTTGGAG
ACTCATCACATTGTGAAGGGGGAGTACTAGTAAATAAATTTTTTCCCAAAGCCAATTGTTGCAC
GAGCTAGTAAATAAATAGTAATACATGTGATCCAAAGCTATTACACACTCTTTATAGCTACTAG
AGTTTCGATTTGTGTTATAGCTCCCGATCGATTAATTGGGATAAGCCGGTTTTATTCCATCAAC
ATGAAGCTTCCATAAATTCACTATATCAAATAAATAATTAGGCCAAAATATAGGAAATTAAATA
AGACCATTTAAATAGATCTAAGACGGGAGATATTAGGATTGATTATCTTCAAATTATGTTTTCA
ATTTCATTAGTTAGGATTTAATTACATATAGGAATAGAAAAATTACCATCAAATGGGGAAGATG
AGCAATGTTCATATAGGATTATAAACAAGTAAAAAAAAAAAAAAAATTTATTTTTGGGTAAGAA
ATATATGAGAATTTTGTGCGCGTTCCAAAAACTCTTGTAAATTTTGGCAAGCTTATGAATATTA
CATAAAGTTTGGTATATAACTGGAAACATATTTATATTACTAAAACTCGTTTAATATTAATTGC
TAAAGAAAGAAAACAGGTAACAAAAGCGTTAAAGTTAACTTTGATTCTATTTATTGATAGATCC
CATCATTAGATTATGAAATATCGTATCCGATTAGATAAATTCATTACCAACCTTTTTTTCTTTC
CTTTTGGTAAACTCTTTCATTTTAAACATATTGAATGTTAAGTGGGATTGCTAACATAAAATAG
TAAAAGTTTTTTTACTATAGGACAACGATCCAATTCCAAGCTAAAGATTGATATATAACTAGAA
ATGGTATTTAAGAGCTTATGACTAACACTAGAGACCCCATCTAAGCCCATAAAATGAGGTTATC
TAAGCAAGTTATGTCTCACGTAATGATCATTATTGGGCTTTATGGGTAATCTATCCCGTTACTC
CAAATCTAGTTCAGCTGCCACGTCACTCTAACTAACTCGTTGGAGGGGAAAGAGTGATATTGAA
GCAAACAAGAACAACGACGATTATGGGTTTTGGGGTTTTATCCATTTCTTTGTCTAATTTTATC
AGATTTTGTCTAGATTTTTGGATCCAAATTATTAGCGGAAATCGAAATTGGGTTTTACGGTTAA
ATCTCGTTCTTGAAAGCTTCCCTTCCATGGGGCTTTTTATCTGGACTTAAAAGCTTGTGCTAGT
CTCACTTGATACTAATGTAAAGGAAGGAGCTTTGGAATGCTTAATTGGCAAGTGACTAGTGGCA
CAACTGTCAGTTTATATATTTTGATTAAACAAATCAAACGTGGGTCTGTGGATGGGCAATAAAC
AACAACATAAATTGAAGAATATCATCACCCCAAATGGTCAATGGATAGATTAGAGAAATAGAAA
AATCAAAAGAAGCTTTGGCAAAGAGCTAAAGATCAAAGCTTTTCTTTGAGGTAATTCGTTTGAC
TCTTTTTTTTTTTTTTTTTTTGCTTGAATCGTGTTGTTCTCTTTGTTCTGCTAGAGATTTGATC
TGTAAATTATGTGATTTATTAAGAAATTGAAAGCTCTGTGTTTCAGAATGAGATTGTGGATTGT
GAGTGTACTCGTGCTTACACACCTTGTCCATGGAGCTCTCTGTTGGGGGAAGGATGGTCACTAC
ACTGTTTGCAAATTAGCTGAGGTGACTTTTCTTGATTAGTTTCTGAGATGTTACACTCTAAGAT
GAACTCTGTGAAAGTGTTGTAAGATACTTGAAGATTGATTTAGCTTTAGAGAACTGTGAAAACA
AAAATGCATCTAGGAGCTTTCTTTATTAGTTAGGATGGAGATAAATGTGGTTTAATCGGCGTTT
CATCGAATTTCTTTGAGATTGGATCATGCTTTAGACTGAAAAGGTATTAGCTTTGTTGATAAGA
TGATTTCAATTTCCAAATCCTCAGGGATTCTTTGAGGATGATACTATTGCTGCAGTGAAGAAAC
TTCTGCCTGAATCAGTTGATGGTGGTGGACTAGCAGATTTTTGCTCATGGCCTGATGAAATTAA
AAAACTCTCGCAATGGCAATGGACTAGCACTTTGCACTATGTTAACACACCTGAATACAGGTGC
AACTACGAGTATTGCCGTGGGTTATCTTTTCCTCCAGCTTCATACATGTTTCTGTTCTGTTTCT
GCTTCCATTGGCTATGTATTTTCTAAGTTCAACTCTATGTCCTTTTGTGTTTTGTGAAGGGGAC
TGCCATGACACTCATAAGCATAAGGACTGGTGTGTGACAGGAGCGATCTTCAATTACACAAACC
AGTTAATGTCTGCTTCTGAAAACTCACAGAATATAGTCCACTGTGAGTTAGATTTTAAGTGAAT
CTGATACTTCTTTTAATGTTTCAGTTTACTGATTTCTGTGTGAGTACATCGATCATAATAGTGT
GACTTAGAAGTCTTTTTCTTTCTGTTCTTGGCAGACAACTTGACAGAGGCTCTCTTGTTCTTGT
CACATTATATGGGAGATGTTCATCAGGTTAGTCCTTTTTGCAAATTCAGTCGAATCATAATATT
ACAAACAAATGCTGTCAGAGTTATATGCATTTGAGGCTACTACTCTATCTACTCTGGACTCTGG
AGGTTTGATTAGTGTATAGTAGCAACACAAGAGTATGGCTAATCTTTATGTGGATTATGATTTT
CGCAGCCCTTGCATACTGGTTTTCTTGGAGATCTAGGTGGTAACACAATAATAGTCAACTGGTA
CCATAACAAATCAAATTTGCACCATGTAAGTGCTTTGTTTTTTAGTCATATTGATGCTAAAAAG
TATCTTTCCTGACACGGAAGTGGAACGATCTTAACTTGAAGGTCTGGGACAACATGATAATTGA
CTCTGCTCTAGAAACATACTACAATTCAAGCCTTCCACACATGATTCAAGCTCTTCAAGCCAAA
CTCAAGGTACAATCTTGCCTTCTCTAATCAGCTTCAGCAAGTTATAGCCGTATCCAAGATAAAC
ACAACTTACATTGAGTGTTTGTTGTTACGTCTGTCTTAATATAGAACGGCTGGTCGAATGATGT
TCCGTCGTGGAAGTCATGTCACTTTCACCAAAAGGCCTGTCCAAATCT
Conservation Information
Conserved circRNAs NA
PMCS 0.160274702
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5658
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017