Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09020_circ_g.2 |
ID in PlantcircBase | ath_circ_001525 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2900658-2902171 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G09020 |
Parent gene annotation |
Sucrose nonfermenting 4-like protein |
Parent gene strand | - |
Alternative splicing | AT1G09020_circ_g.1 AT1G09020_circ_g.3 AT1G09020_circ_g.4 AT1G09020_circ_g.5 AT1G09020_circ_g.6 AT1G09020_circ_g.7 AT1G09020_circ_g.8 AT1G09020_circ_g.9 AT1G09020_circ_g.10 AT1G09020_circ_g.11 AT1G09020_circ_g.12 AT1G09020_circ_g.13 AT1G09020_circ_g.14 AT1G09020_circ_g.15 AT1G09020_circ_g.16 AT1G09020_circ_g.17 AT1G09020_circ_g.18 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09020.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.136326933 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2900673-2900660(-) |
Potential amino acid sequence |
MTVHQLGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKI LQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVP RIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI HLDDMTVHQLGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDV ALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLG TWVPRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKA YAQIHLDDMTVHQLGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDN LKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICS IPLGTWVPRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALA KDKAYAQIHLDDMTVHQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |