Plant Circular RNA Database

Detail information of Os05g0358500_circ_g.16

			
						 General Information
					
						CircRNA Name
						Os05g0358500_circ_g.16
					
						ID in PlantcircBase
						osa_circ_027581
					
						Alias
						Os_ciR669, 
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 17019124-17019556  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ, CIRI-long
					
						Parent gene
						
							Os05g0358500						
					
						Parent gene annotation
						
							Protein phosphatase 2C domain containing protein. (Os05t0358500-
01);Protein phosphatase 2C domain containing protein. (Os05t0358
500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0358500_circ_g.14 Os05g0358500_circ_g.15 Os05g0358500_circ_g.17 						
					
						Support reads
						46/587/719
					
						Tissues
						root/root/shoot, root, anther, seed, pistil, root, leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0358500-01:1
Os05t0358500-02:1

General Information
CircRNA Name	Os05g0358500_circ_g.16
ID in PlantcircBase	osa_circ_027581
Alias	Os_ciR669,
Organism	Oryza sativa
Position	chr5: 17019124-17019556 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ, CIRI-long
Parent gene	Os05g0358500
Parent gene annotation	Protein phosphatase 2C domain containing protein. (Os05t0358500- 01);Protein phosphatase 2C domain containing protein. (Os05t0358 500-02)
Parent gene strand	-
Alternative splicing	Os05g0358500_circ_g.14 Os05g0358500_circ_g.15 Os05g0358500_circ_g.17
Support reads	46/587/719
Tissues	root/root/shoot, root, anther, seed, pistil, root, leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0358500-01:1 Os05t0358500-02:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGAT
GCCGCACAACACGCTCCCCTCCTCGCACCCGAATCCggggcaggttgggcttgaagtcgacggt
gagctgcacggcggcgaggcgggcgccgccaccgtcgtcgggggaggcggtggccaggacggcg
cgcgagtc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 113
Transcript exons: 17019124-17019153,17019474-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGT
GCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
Transcript length: 125
Transcript exons: 17019124-17019142,17019451-17019556
GGGGCAGGTTGGGCTTGAAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGC
CCCACTGCCCGTGCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
Transcript length: 152
Transcript exons: 17019124-17019192,17019474-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGATGCCGCACAACAC
GCTCCCCTCCTCGCACCCGAATCC
Transcript length: 159
Transcript exons: 17019124-17019195,17019470-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGGGGCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGATGCCGC
ACAACACGCTCCCCTCCTCGCACCCGAATCC
Transcript length: 163
Transcript exons: 17019124-17019195,17019466-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGGGGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGATG
CCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
Transcript length: 168
Transcript exons: 17019124-17019201,17019467-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGGGGAGGCGGCTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGA
AGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
Transcript length: 170
Transcript exons: 17019124-17019205,17019469-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGGGGAGGCGGTGGCCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTC
GAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
Transcript length: 260
Transcript exons: 17019124-17019208,17019382-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGGGGAGGCGGTGGCCAGCGCAGAGCCGCTTCTCGCCGCCGTCGATGAGCGCCGCCAGCGT
CACGGCCTCCCGCCACCGCCGGAGCAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACG
TAGTGGCCCCACTGCCCGTGCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGA
ATCC
Transcript length: 433
Transcript exons: 17019124-17019556
GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGGGGAGGCGGTGGCCAGGACGGCGCGCGAGTCGCCGACGTTGGCGACGACGAGGAGGTCG
CCGTGCTTGACGAGGGACAGCGCGGTGCAGCCGCTGTGGACGGCGTCGAGGCGGCGGCTGGCGC
GGAGCTCGGCGTCGACGGCGGCGCAGGCGGCCAGGTAGGACTGGCGCCACAGGTCGGGCCGGCA
CTCGCAGAGCCGCTTCTCGCCGCCGTCGATGAGCGCCGCCAGCGTCACGGCCTCCCGCCACCGC
CGGAGCAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGT
GCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
						
					

						Genomic sequence
						
							GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC
GTCGGGGGAGGCGGTGGCCAGGACGGCGCGCGAGTCGCCGACGTTGGCGACGACGAGGAGGTCG
CCGTGCTTGACGAGGGACAGCGCGGTGCAGCCGCTGTGGACGGCGTCGAGGCGGCGGCTGGCGC
GGAGCTCGGCGTCGACGGCGGCGCAGGCGGCCAGGTAGGACTGGCGCCACAGGTCGGGCCGGCA
CTCGCAGAGCCGCTTCTCGCCGCCGTCGATGAGCGCCGCCAGCGTCACGGCCTCCCGCCACCGC
CGGAGCAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGT
GCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
						
					

			
		

Sequences
Splice junction sequence	GCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGAT GCCGCACAACACGCTCCCCTCCTCGCACCCGAATCCggggcaggttgggcttgaagtcgacggt gagctgcacggcggcgaggcgggcgccgccaccgtcgtcgggggaggcggtggccaggacggcg cgcgagtc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 113 Transcript exons: 17019124-17019153,17019474-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGT GCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC Transcript length: 125 Transcript exons: 17019124-17019142,17019451-17019556 GGGGCAGGTTGGGCTTGAAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGC CCCACTGCCCGTGCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC Transcript length: 152 Transcript exons: 17019124-17019192,17019474-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGATGCCGCACAACAC GCTCCCCTCCTCGCACCCGAATCC Transcript length: 159 Transcript exons: 17019124-17019195,17019470-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGGGGCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGATGCCGC ACAACACGCTCCCCTCCTCGCACCCGAATCC Transcript length: 163 Transcript exons: 17019124-17019195,17019466-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGGGGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGAAGATG CCGCACAACACGCTCCCCTCCTCGCACCCGAATCC Transcript length: 168 Transcript exons: 17019124-17019201,17019467-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGGGGAGGCGGCTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTCGA AGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC Transcript length: 170 Transcript exons: 17019124-17019205,17019469-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGGGGAGGCGGTGGCCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGTGCCCGTC GAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC Transcript length: 260 Transcript exons: 17019124-17019208,17019382-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGGGGAGGCGGTGGCCAGCGCAGAGCCGCTTCTCGCCGCCGTCGATGAGCGCCGCCAGCGT CACGGCCTCCCGCCACCGCCGGAGCAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACG TAGTGGCCCCACTGCCCGTGCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGA ATCC Transcript length: 433 Transcript exons: 17019124-17019556 GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGGGGAGGCGGTGGCCAGGACGGCGCGCGAGTCGCCGACGTTGGCGACGACGAGGAGGTCG CCGTGCTTGACGAGGGACAGCGCGGTGCAGCCGCTGTGGACGGCGTCGAGGCGGCGGCTGGCGC GGAGCTCGGCGTCGACGGCGGCGCAGGCGGCCAGGTAGGACTGGCGCCACAGGTCGGGCCGGCA CTCGCAGAGCCGCTTCTCGCCGCCGTCGATGAGCGCCGCCAGCGTCACGGCCTCCCGCCACCGC CGGAGCAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGT GCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC
Genomic sequence	GGGGCAGGTTGGGCTTGAAGTCGACGGTGAGCTGCACGGCGGCGAGGCGGGCGCCGCCACCGTC GTCGGGGGAGGCGGTGGCCAGGACGGCGCGCGAGTCGCCGACGTTGGCGACGACGAGGAGGTCG CCGTGCTTGACGAGGGACAGCGCGGTGCAGCCGCTGTGGACGGCGTCGAGGCGGCGGCTGGCGC GGAGCTCGGCGTCGACGGCGGCGCAGGCGGCCAGGTAGGACTGGCGCCACAGGTCGGGCCGGCA CTCGCAGAGCCGCTTCTCGCCGCCGTCGATGAGCGCCGCCAGCGTCACGGCCTCCCGCCACCGC CGGAGCAGCGCCGGCGGCAGCGACTCCCTCACCGCCTTCGCCACGTAGTGGCCCCACTGCCCGT GCCCGTCGAAGATGCCGCACAACACGCTCCCCTCCTCGCACCCGAATCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006187* osi_circ_015367 						
					
						PMCS
						0.563454465

Conservation Information
Conserved circRNAs	osi_circ_006187* osi_circ_015367
PMCS	0.563454465

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17019520-17019138(+)
						
						Potential amino acid sequence
						
							MPHNTLPSSHPNPGQVGLEVDGELHGGEAGAATVVGGGGGQDGARVADVGDDEEVAVLDEGQRG
AAAVDGVEAAAGAELGVDGGAGGQVGLAPQVGPALAEPLLAAVDERRQRHGLPPPPEQRRRQRL
PHRLRHVVAPLPVPVEDAAQHAPLLAPESGAGWA*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17019520-17019138(+)
Potential amino acid sequence	MPHNTLPSSHPNPGQVGLEVDGELHGGEAGAATVVGGGGGQDGARVADVGDDEEVAVLDEGQRG AAAVDGVEAAAGAELGVDGGAGGQVGLAPQVGPALAEPLLAAVDERRQRHGLPPPPEQRRRQRL PHRLRHVVAPLPVPVEDAAQHAPLLAPESGAGWA*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Ye et al., 2016;Chu et al., 2017; this study

circRNA

Detail information of Os05g0358500_circ_g.16

Address

Any questions?

Supported by