Detail information of Os01g0375200_circ_g.2


General Information
CircRNA Name Os01g0375200_circ_g.2
ID in PlantcircBase osa_circ_001756
Alias NA
Organism Oryza sativa
Position chr1: 15489386-15489870  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os01g0375200
Parent gene annotation Similar to shikimate biosynthesis protein aroDE. (Os01t0375200-0
1);Similar to shikimate biosynthesis protein aroDE. (Os01t037520
0-02);Similar to shikimate biosynthesis protein aroDE. (Os01t037
5200-03)
Parent gene strand +
Alternative splicing Os01g0375200_circ_g.2 Os01g0375200_circ_ag.1 Os01g0375200_circ_ag.3 Os01g0375200_circ_ag.4 Os01g0375200_circ_ag.5
Support reads 1
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0375200-02:3
Os01t0375200-03:3
Os01t0375200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCTTGTTGTTGTTGTAGGTGCTGGTGGAGCTGGTAAGGCAATTGCTTATGGGGCAAAGGAGA
AGGGTGCAAGAGTTGTAGTAGCAAATCGTACCTACGttgctctcttcctttcaaagtggacgct
gtacagtgttgccatgaacatgacccagttgctaaggtaccttgatgtggtacacttgatctaa
ttgcttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 311
Transcript exons: 15489386-15489449,15489540-15489645,15489730-15489870
TTGCTCTCTTCCTTTCAAAGTGGACGCTGTACAGTGTTGCCATGAACATGACCCAGTTGCTAAG
TCAATCGGTGCCATAAACACCATAATTAGGAGACCAGATGGCAAACTAGTGGGCTACAATACTG
ACTACATTGGAGCAATTTCTGCTATTGAGGATGGCATAGGAGGCCCAGGATCAAAGGATGCTGC
CATCTCACCTTTGGCTGGCAGGCTTGTTGTTGTTGTAGGTGCTGGTGGAGCTGGTAAGGCAATT
GCTTATGGGGCAAAGGAGAAGGGTGCAAGAGTTGTAGTAGCAAATCGTACCTACG

Genomic sequence TTGCTCTCTTCCTTTCAAAGTGGACGCTGTACAGTGTTGCCATGAACATGACCCAGTTGCTAAG
GTACCTTGATGTGGTACACTTGATCTAATTGCTTCATTTAATTACCATTTTCAGATTTCTTTGA
CCTTTGATATTTTCTTCAATCTGCAGTCAATCGGTGCCATAAACACCATAATTAGGAGACCAGA
TGGCAAACTAGTGGGCTACAATACTGACTACATTGGAGCAATTTCTGCTATTGAGGATGGCATA
GGAGGTTTTTATAATCGTAATTCTGGAGCAATTTTTTTACTCTTTTTTGGGAGTCATGGAAAAA
TATCTGATAAATTATGTTTCACAGGCCCAGGATCAAAGGATGCTGCCATCTCACCTTTGGCTGG
CAGGCTTGTTGTTGTTGTAGGTGCTGGTGGAGCTGGTAAGGCAATTGCTTATGGGGCAAAGGAG
AAGGGTGCAAGAGTTGTAGTAGCAAATCGTACCTACG
Conservation Information
Conserved circRNAs osi_circ_009475
PMCS 0.686796923
Functional Information
Coding potential Y
Potential coding position 15489564-15489627(-)
Potential amino acid sequence MVFMAPIDLATGSCSWQHCTASTLKGREQRRYDLLLQLLHPSPLPHKQLPYQLHQHLQQQQACQ
PKVRWQHPLILGLLCHPQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017