Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0375200_circ_g.2 |
ID in PlantcircBase | osa_circ_001756 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 15489386-15489870 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os01g0375200 |
Parent gene annotation |
Similar to shikimate biosynthesis protein aroDE. (Os01t0375200-0 1);Similar to shikimate biosynthesis protein aroDE. (Os01t037520 0-02);Similar to shikimate biosynthesis protein aroDE. (Os01t037 5200-03) |
Parent gene strand | + |
Alternative splicing | Os01g0375200_circ_g.2 Os01g0375200_circ_ag.1 Os01g0375200_circ_ag.3 Os01g0375200_circ_ag.4 Os01g0375200_circ_ag.5 |
Support reads | 1 |
Tissues | root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0375200-02:3 Os01t0375200-03:3 Os01t0375200-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009475 |
PMCS | 0.686796923 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15489564-15489627(-) |
Potential amino acid sequence |
MVFMAPIDLATGSCSWQHCTASTLKGREQRRYDLLLQLLHPSPLPHKQLPYQLHQHLQQQQACQ PKVRWQHPLILGLLCHPQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |