Plant Circular RNA Database

Detail information of AT3G44765_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT3G44765_circ_g.1
					
						ID in PlantcircBase
						ath_circ_026085
					
						Alias
						3:16311993-16314011
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 16311993-16314011  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT3G44765						
					
						Parent gene annotation
						
							other RNA
							
						Parent gene strand
						+
					
						Alternative splicing
						
							3_circ_ig.4 3_circ_ig.5 3_circ_ig.6 3_circ_ig.7 3_circ_ig.8 3_circ_ig.9 3_circ_ig.10 3_circ_igg.11 3_circ_igg.12 3_circ_igg.13 3_circ_ig.14 3_circ_ig.15 3_circ_igg.16 3_circ_igg.17 3_circ_ig.18 AT3G44765_circ_g.2 AT3G44765_circ_g.3 3_circ_igg.4 3_circ_igg.5 3_circ_igg.6 						
					
						Support reads
						1/1/1/2
					
						Tissues
						root;flower
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT3G44765.1:10

General Information
CircRNA Name	AT3G44765_circ_g.1
ID in PlantcircBase	ath_circ_026085
Alias	3:16311993-16314011
Organism	Arabidpsis thaliana
Position	chr3: 16311993-16314011 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT3G44765
Parent gene annotation	other RNA
Parent gene strand	+
Alternative splicing	3_circ_ig.4 3_circ_ig.5 3_circ_ig.6 3_circ_ig.7 3_circ_ig.8 3_circ_ig.9 3_circ_ig.10 3_circ_igg.11 3_circ_igg.12 3_circ_igg.13 3_circ_ig.14 3_circ_ig.15 3_circ_igg.16 3_circ_igg.17 3_circ_ig.18 AT3G44765_circ_g.2 AT3G44765_circ_g.3 3_circ_igg.4 3_circ_igg.5 3_circ_igg.6
Support reads	1/1/1/2
Tissues	root;flower
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT3G44765.1:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCAGGTGAAATTTTGGTTCAGTAGTCAAGAGAAAATGAGGGGTTGTGTGTCCTGCTTCATGGAG
ATATCTTTGAGGTCCAAAGAACAAAAAATTTCGAAGctgtggacattgtttccttgccaacatg
ttcaaagtgattcacttgccttggaaagaagaaggatcaggtatataaactatcttaatccctt
ttcagagg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGTGGACATTGTTTCCTTGCCAACATGTTCAAAGTGATTCACTTGCCTTGGAAAGAAGAAGGA
TCAGGTATATAAACTATCTTAATCCCTTTTCAGAGGTTTTGTAATTTTTCTATGATCTTGTATA
TATATTATACTACTAACATTATGGTTTATTACCAAGATAGACGATTCTTGAACCAAATTAAGAA
AGCCATCCAGTCTCCTCGAAAGAAGAAGGGTCAGCTAGATAAACTACACACACTGATACAATGT
TTTCTCGAAATATCTGACGTGTTTGAGTGATTCGTAACTTGCATGAACTACTAAGCATATCATA
TTGCTCTACGAGATCTTAATTCTAAGGTATAGTACTAACGAAATCAGGGATTAGATTCTTGTTG
TTGGTGAGTCTTGTGCATATAATTATATCAACATGTTCAATATTTCATATGTGGACAGTAGGAG
CCAAGCAGTGGGATCCCCACTTGGATTAGTTAGTAAGATTTCCTGCAAATTTCTTTATTAGCAT
TGTTGTAGTTTTATTTAATAGTCATATGTATTTAGTAACTGCTATAAGAATGGTTTTGTCTCAA
GATGGAGGAGGACTCTTGAGGTGAAAATAACTTGGGAAAGTGATTCAGTCGCCTCGGTAAAAGG
AGGGTCAGGTAGACAAACTATCTTTGTCTCTTTTCAAACTTTTTGTAGTTTTATATGGTCTTGT
GTATTAAGTATACTGCTAATATAATGGTTTTGTACCAAGATAGAAGATTCTTGATCGGAAACGA
ACCAAACTTAAGAAAGCCATTCAGTCTCTGTGAAAGTACAAGGGTCAGGTAGGTAAACATTTAT
AATGTTTTTTTCTGAAAATGTTTGATGTGTTTAAGTGATCTATAACTTGTAGGAACTAATCAAA
CATATCATATTTCTGTTTGAGATCTCGATTTCCAAGTACATATCATACAAACGCAGTCAGGGAT
CGAATTCTAACTGTTGGAGAGTCTATCTCACATGAGACAACCAGATATTTTCTCAGTGCTAAGG
TGGCTAATTTTCTTTATCCCCTCTTACAAAACTTGACATTCTCTTGTTTGCTAACAAAATGCTT
CAAATACTAGATAGTGGAACTTTATTCTACAAAGAACAAATTTCTTGCCAAGAGCAAACGAGAG
GTCATATATCTATCAGCTGCACATAACAACATTTCTAGGGTCGATTTCTAGCCAAGAGCCTATG
AGATCAGGTAAAGTAATTATTTTCCTCTCTTCTCTTGTGTATTTTCTCATACATTTGTCCCTAC
AGGTTCTTTGCATTTGATGAGATACCTTGGCTTGTTTGGGTTATTCAAACTAATGTTTTGCATT
TGATCGTTTTGGCTCTGTCTTCGAATTTAAAGAAGCCATCTTATTCGTATAATCTGGACTAATG
GGTTTGGTTATTAGTCTATCACTGTGTTTATGTGTTTCTATGGTGATTGATTTGGAAAAAATGG
TCAATTGTTATATTCATACAAGAAGATTATATGGCATCACATACATTGTTTATCTCGATATTCC
GTGTTTCAATAATTGCATGTTTATGTTACGAACTCTTATCAGTCTTGTGGTCATATGATTCAGC
AATCAAGTGGCAATTCATATCTCAATTTGGAGACGAGAACATTGATGTAAGTTTTAGAACACTC
TTTAAATTATATGTGTTGTTTCTAAGATGATGCAGTCTCCTTAATGTGTTCTTAAAGTGTGATT
GTTTTTCTAACTTTGATAGTTATGTTTTTCAGTTGTACTCTTTGTTAACACATTTTCCGTCAAG
ATTAAAAGTAGAAAATATTAGCAACCAGTAAGATTTTGGATCTGTAAGACTCTTACCATGTTTT
TTTTTTCTTTCTTGGCAATGATTTTGTCGTTTCATTTTATTGTCCTATTTGTATGATGTACTTT
CAGGTGAAATTTTGGTTCAGTAGTCAAGAGAAAATGAGGGGTTGTGTGTCCTGCTTCATGGAGA
TATCTTTGAGGTCCAAAGAACAAAAAATTTCGAAG
						
					

			
		

Sequences
Splice junction sequence	TCAGGTGAAATTTTGGTTCAGTAGTCAAGAGAAAATGAGGGGTTGTGTGTCCTGCTTCATGGAG ATATCTTTGAGGTCCAAAGAACAAAAAATTTCGAAGctgtggacattgtttccttgccaacatg ttcaaagtgattcacttgccttggaaagaagaaggatcaggtatataaactatcttaatccctt ttcagagg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGTGGACATTGTTTCCTTGCCAACATGTTCAAAGTGATTCACTTGCCTTGGAAAGAAGAAGGA TCAGGTATATAAACTATCTTAATCCCTTTTCAGAGGTTTTGTAATTTTTCTATGATCTTGTATA TATATTATACTACTAACATTATGGTTTATTACCAAGATAGACGATTCTTGAACCAAATTAAGAA AGCCATCCAGTCTCCTCGAAAGAAGAAGGGTCAGCTAGATAAACTACACACACTGATACAATGT TTTCTCGAAATATCTGACGTGTTTGAGTGATTCGTAACTTGCATGAACTACTAAGCATATCATA TTGCTCTACGAGATCTTAATTCTAAGGTATAGTACTAACGAAATCAGGGATTAGATTCTTGTTG TTGGTGAGTCTTGTGCATATAATTATATCAACATGTTCAATATTTCATATGTGGACAGTAGGAG CCAAGCAGTGGGATCCCCACTTGGATTAGTTAGTAAGATTTCCTGCAAATTTCTTTATTAGCAT TGTTGTAGTTTTATTTAATAGTCATATGTATTTAGTAACTGCTATAAGAATGGTTTTGTCTCAA GATGGAGGAGGACTCTTGAGGTGAAAATAACTTGGGAAAGTGATTCAGTCGCCTCGGTAAAAGG AGGGTCAGGTAGACAAACTATCTTTGTCTCTTTTCAAACTTTTTGTAGTTTTATATGGTCTTGT GTATTAAGTATACTGCTAATATAATGGTTTTGTACCAAGATAGAAGATTCTTGATCGGAAACGA ACCAAACTTAAGAAAGCCATTCAGTCTCTGTGAAAGTACAAGGGTCAGGTAGGTAAACATTTAT AATGTTTTTTTCTGAAAATGTTTGATGTGTTTAAGTGATCTATAACTTGTAGGAACTAATCAAA CATATCATATTTCTGTTTGAGATCTCGATTTCCAAGTACATATCATACAAACGCAGTCAGGGAT CGAATTCTAACTGTTGGAGAGTCTATCTCACATGAGACAACCAGATATTTTCTCAGTGCTAAGG TGGCTAATTTTCTTTATCCCCTCTTACAAAACTTGACATTCTCTTGTTTGCTAACAAAATGCTT CAAATACTAGATAGTGGAACTTTATTCTACAAAGAACAAATTTCTTGCCAAGAGCAAACGAGAG GTCATATATCTATCAGCTGCACATAACAACATTTCTAGGGTCGATTTCTAGCCAAGAGCCTATG AGATCAGGTAAAGTAATTATTTTCCTCTCTTCTCTTGTGTATTTTCTCATACATTTGTCCCTAC AGGTTCTTTGCATTTGATGAGATACCTTGGCTTGTTTGGGTTATTCAAACTAATGTTTTGCATT TGATCGTTTTGGCTCTGTCTTCGAATTTAAAGAAGCCATCTTATTCGTATAATCTGGACTAATG GGTTTGGTTATTAGTCTATCACTGTGTTTATGTGTTTCTATGGTGATTGATTTGGAAAAAATGG TCAATTGTTATATTCATACAAGAAGATTATATGGCATCACATACATTGTTTATCTCGATATTCC GTGTTTCAATAATTGCATGTTTATGTTACGAACTCTTATCAGTCTTGTGGTCATATGATTCAGC AATCAAGTGGCAATTCATATCTCAATTTGGAGACGAGAACATTGATGTAAGTTTTAGAACACTC TTTAAATTATATGTGTTGTTTCTAAGATGATGCAGTCTCCTTAATGTGTTCTTAAAGTGTGATT GTTTTTCTAACTTTGATAGTTATGTTTTTCAGTTGTACTCTTTGTTAACACATTTTCCGTCAAG ATTAAAAGTAGAAAATATTAGCAACCAGTAAGATTTTGGATCTGTAAGACTCTTACCATGTTTT TTTTTTCTTTCTTGGCAATGATTTTGTCGTTTCATTTTATTGTCCTATTTGTATGATGTACTTT CAGGTGAAATTTTGGTTCAGTAGTCAAGAGAAAATGAGGGGTTGTGTGTCCTGCTTCATGGAGA TATCTTTGAGGTCCAAAGAACAAAAAATTTCGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.095985216

Conservation Information
Conserved circRNAs	NA
PMCS	0.095985216

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT3G44765_circ_g.1

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