Detail information of POPTR_0009s09550_circ_g.3


General Information
CircRNA Name POPTR_0009s09550_circ_g.3
ID in PlantcircBase pop_circ_002556
Alias Chr09:8430107-8432515
Organism Populus trichocarpa
Position chr9: 8420193-8422599  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0009s09550
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered POPTR_0009s09550.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCAACCATGAGAATGGGAAAGTGGTTAGGTATGTTCCATCACTTGGTGCCATGAACAGTGTG
TTGGGACTCTGCTGGCTCAAGAAGTATCCATCCAAGgctgaggttaaaaagtcctgcaatgagt
tatgcagtttggagatcatcttggaccatcttaaagatattgacgttcctccgcttcttgatgt
atgtgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGAGGTTAAAAAGTCCTGCAATGAGTTATGCAGTTTGGAGATCATCTTGGACCATCTTAAAG
ATATTGACGTTCCTCCGCTTCTTGATGTATGTGCAACCATAGAAACCTCCGAGATTGAAGCAGT
TGACATACGCAATGGACCATCATGCTCTTTGAATGGAGAATGTGCTTTATCTTTGATGCGTGCT
TTCAATCAAAAGCTTCGAGCAGTTGATCTTCAGGATTCACCATTTGGAAAGGACTTCTTGCGGT
ATATAGTTGTGCTTATTTATTATTTGTGTTATGGTTTTGATGAGTAAAAACTAGTTCTTTGATA
ACGCACCGAGGGGACACCATCTGTTTGAAATGATCAGGAAAGCCACATCAATATAATGAATCAA
AAAACTCTAAAATGCCCTCATTTACCAAAAAAAGAAAATCCCTGCATACCAGAAATGCGAAGTC
TGTAGCCGCTGAAGGTTTTGAAGGTTTTAAAGCAGCCAGAAGTTGAGAGAAAGGCCTGGATAAG
AACAGATCCTTCCTTAAACCCTACCATCACCTCGTATTCTCTTGTTAGAATTGTCTTGAGTCCT
GAATTCTTTCTCTTAAACGAGCTGGGAATTTCACTATAGTTTTGCAGATACAATTTATTTTTTT
TACCACTAACTTCAGTTTCATACCTAGGGAGCTCTCGCAGAGAGGTTTGGCATGCCAAATTTTG
AATTTGAGGTCTTCTCATTTCCGGAAGCTGAACATGGCAGGGAAATTCATGCAAATACATACTC
TCAACCTTGATTTTAGTACTTCACTAACAAGCTTCCTGGAGGATTGTTTTACTTGCATGCCCAA
TCTAATTTGCCTCTCAATGTGTGAGACAAGAGTTGCAAATCTATGGACAACTATTTCAGCACTT
TCTAAACTCTCTTGTTTGGTAGAACTTCGGTTTCAGAAGTGGCTATGCAATGATAGTGCCTCAC
CGTCAGCATCTTCAGGTGGAAATTTGGAGGACCAACCTGATGTTGGTCTGCCAATCAGCTGTAC
TGACATTGGAGAACAGTTGACTGATATTGAGGAAGAAACATATCTTAACCCAGGCACAGACGAG
GCATTTAGGAATTTGTTTTCATTCAATAATATAGCTATAAATCAACCAGTTCAAAGTATGATGG
AGGATTCATCTGATGACAGTGAAGTTGATTTTTCAAGTAATTGGCGGGAATTTGGTTATACGGA
TTTGTTGGCCAATTTTTCTTCTGGTTGGAACAGGCAGGTCAATCTGCAAAATGAGGTAATCCAC
ATGTGCACTTTCCTTATGTACTGGTCTCTAGTAATTTCAGCAGGAGGAGGCAGATGCATCTCAT
CGCTTAAGAAAGTGGTGTCTTTTTGTTCATTTTCAATTGATGGCATTCAGAACGAGTCATTTGA
ATTACAAATGAAGTCCTATTTAGGAAGTCTAGCAAAGTATGATTGTTGTATCTTTTCACCTGCA
ATTCTTTTTAATTTTTGGCATTTCTCCTGGTCACATTTGACTGTAAAGGTTTCATGGATTATAT
ATCTTGTTTTTCTTGTCCTTTTCTTTTTAAAGGGGAAAGGGTCTGGTCATTTATGCTTATATGT
GCAGACTTCCTGTAGTGCATGATCCCACCTTCCTTTATAATGCTGGATTATTAAATGTCTACTA
TAGATTGAATTTATACTATTTTCTTGTGTCCATCCAACTCTCTTCTTTTTAAAATCCTCAATAA
TCAAATTTCAAATTTACTTTGGTAGGTTTCTTCTGGTGCATCATTGAATCAAAAAGAGGAGTCC
CTTACTGGTTCATTTGGGAGACATATTGCAGATGTTCCTTTGAAGTATATCCCTCGACATGCCT
CACCAATATGCTTTGAGAAACATTATAGAGAGTACATGATAGCGTCATTACCCAATTTGAAAGT
TTTGGACAACTTACCTGTCAGAAAGATTGACAGAGAAAGGGCTGCTGTTACATTTTCACAATAC
TTTGAGTACTTACCATACAATCGGAAGCATAAAGAGAGTGTTGTTAGTATCTTGCATAAGCGTG
AAATAAAAGAAACTCGTTCTCATATACAGTCAAAAAATCAAAAGCTTTCTTATTCTCATGGAAA
CTCACAATACTTTTATACCCGGTCTCTTGGTGCTGCCAAGGTGGGATCTTCTGCCTGGCCGTTC
TTGCATTCACTTTCTGTATCAGGCTGTGATTTGGGTGATGGAAGTAGGAGCTTTCGCCCCAGAC
AATTTGAGTACCATCCGTCTCTTTCTAGTCTAATGGTGTTTGGAACTCTAGATGGTGAAGTTGT
TGTGGTCAACCATGAGAATGGGAAAGTGGTTAGGTATGTTCCATCACTTGGTGCCATGAACAGT
GTGTTGGGACTCTGCTGGCTCAAGAAGTATCCATCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.095674806
Functional Information
Coding potential Y
Potential coding position 8420377-8422596(+)
8420328-8422319(-)
Potential amino acid sequence MRAFNQKLRAVDLQDSPFGKDFLRELSQRGLACQILNLRSSHFRKLNMAGKFMQIHTLNLDFST
SLTSFLEDCFTCMPNLICLSMCETRVANLWTTISALSKLSCLVELRFQKWLCNDSASPSASSGG
NLEDQPDVGLPISCTDIGEQLTDIEEETYLNPGTDEAFRNFEVDFSSNWREFGYTDLLANFSSG
WNRQVNLQNEVSSGASLNQKEESLTGSFGRHIADVPLKYIPRHASPICFEKHYREYMIASLPNL
KVLDNLPVRKIDRERAAVTFSQYFEYLPYNRKHKESVVSILHKREIKETRSHIQSKNQKLSYSH
GNSQYFYTRSLGAAKVGSSAWPFLHSLSVSGCDLGDGSRSFRPRQFEYHPSLSSLMVFGTLDGE
VVVVNHENGKVVRYVPSLGAMNSVLGLCWLKKYPSKAEVKKSCNELCSLEIILDHLKDIDVPPL
LDVCATIETSEIEAVDIRNGPSCSLNGECALSLMRAFNQKLRAVDLQDSPFGKDFLRELSQRGL
ACQILNLRSSHFRKLNMAGKFMQIHTLNLDFSTSLTSFLEDCFTCMPNLICLSMCETRVANLWT
TISALSKLSCLVELRFQKWLCNDSASPSASSGGNLEDQPDVGLPISCTDIGEQLTDIEEETYLN
PGTDEAFRNFEVDFSSNWREFGYTDLLANFSSGWNRQVNLQNEVSSGASLNQKEESLTGSFGRH
IADVPLKYIPRHASPICFEKHYREYMIASLPNLKVLDNLPVRKIDRERAAVTFSQYFEYLPYNR
KHKESVVSILHKREIKETRSHIQSKNQKLSYSHGNSQYFYTRSLGAAKVGSSAWPFLHSLSVSG
CDLGDGSRSFRPRQFEYHPSLSSLMVFGTLDGEVVVVNHENGKVVRYVPSLGAMNSVLGLCWLK
KYPSKAEVKKSCNELCSLEIILDHLKDIDVPPLLDVCATIETSEIEAVDIRNGPSCSLNGECAL
SLMRAFNQKLRAVDLQDSPFGKDFLRELSQRGLACQILNLRSSHFRKLNMAGKFMQIHTLNLDF
STSLTSFLEDCFTCMPNLICLSMCETRVANLWTTISALSKLSCLVELRFQKWLCNDSASPSASS
GGNLEDQPDVGLPISCTDIGEQLTDIEEETYLNPGTDEAFRNFEVDFSSNWREFGYTDLLANFS
SGWNRQVNLQNEVSSGASLNQKEESLTGSFGRHIADVPLKYIPRHASPICFEKHYREYMIASLP
NLKVLDNLPVRKIDRERAAVTFSQYFEYLPYNRKHKESVVSILHKREIKETRSHIQSKNQKLSY
SHGNSQYFYTRSLGAAKVGSSAWPFLHSLSVSGCDLGDGSRSFRPRQFEYHPSLSSLMVFGTLD
GEVVVVNHENGKVVRYVPSLGAMNSVLGLCWLKKYPSKAEVKKSCNELCSLEIILDHLKDIDVP
PLLDVCATIETSEIEAVDIRNGPSCSLNGECALSLMRAFNQKLRAVDLQDSPFGKDFLRELSQR
GLACQILNLRSSHFRKLNMAGKFMQIHTLNLDFSTSLTSFLEDCFTCMPNLICLSMCETRVANL
WTTISALSKLSCLVELRFQKWLCNDSASPSASSGGNLEDQPDVGLPISCTDIGEQLTDIEEETY
LNPGTDEAFRNFEVDFSSNWREFGYTDLLANFSSGWNRQVNLQNEVSSGASLNQKEESLTGSFG
RHIADVPLKYIPRHASPICFEKHYREYMIASLPNLKVLDNLPVRKIDRERAAVTFSQYFEYLPY
NRKHKESVVSILHKREIKETRSHIQSKNQKLSYSHGNSQYFYTRSLGAAKVGSSAWPFLHSLSV
SGCDLGDGSRSFRPRQFEYHPSLSSLMVFGTLDGEVVVVNHENGKVVRYVPSLGAMNSVLGLCW
LKKYPSK(+)
MSTASISEVSMVAHTSRSGGTSISLRWSKMISKLHNSLQDFLTSALDGYFLSQQSPNTLFMAPS
DGTYLTTFPFSWLTTTTSPSRVPNTIRLERDGWYSNCLGRKLLLPSPKSQPDTESECKNGQAED
PTLAAPRDRV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021