Detail information of Zm00001d025837_circ_g.1


General Information
CircRNA Name Zm00001d025837_circ_g.1
ID in PlantcircBase zma_circ_010333
Alias zma_circ_0000068
Organism Zea mays
Position chr10: 131422385-131423538  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d025837
Parent gene annotation Putative RING zinc finger domain superfamily protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d025837_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAATCGGTCAGGAGTGTCAGGAACCTCAAGAATCTCATCAGAATTCATGTCAGTCATATTCAC
TCTATTTATTTAAGTTGCAGAAACTTGCCCCTTCACcccctcaaattagcttctccagtttgat
cactatccaagatatcacagtcaattccttttccattgttgttgaggcctgataagctaacttc
agaacaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCTCAAATTAGCTTCTCCAGTTTGATCACTATCCAAGATATCACAGTCAATTCCTTTTCCAT
TGTTGTTGAGGCCTGATAAGCTAACTTCAGAACAACTGCTGTTGTTTGCATGACATTTGGACTG
CCGAACCAAAGTCCTGCCAAATCTGTCTGTTCTCAGCTTTTTTGCGGCCCTTGTGTCCATATTG
TGTCCAGACATCAATTTATTGTTCACTTCAGATCTCTGCCTTGTCATTATTGGTGAATTCTCCG
TGAGGTCAATCACATCACCTCCGTCAAATGCATCAGGCTGATGCGGATGGTCCAAATGTTCACT
TAAAGAGCACATTTCCTGTTTTTCATTAACTTTTGCATCTGTCTTGGCTATGTTAGAGGGGGAA
ATACATCCATTGCGTACCAGCCTTTTTTGGCCCACATGCCTTCGAGGAAAAACACGCAGAGGGC
TTGTAGGTCCTGCAATGACCTTGTTAGTGATCAAGTCCCCTTTGACCTCCCCAGAACTTGATCC
TGGACAAACATCAGCACCTGTTACACCTTTCAGCTTATCAGTAGTGCGAGTGCATAATCTGTAT
CCTGGTTTTCCCACTTGAATAGTAGGAAAACCTGGTCCTATGTCTAGAAAGTTTGCACTCTGAT
GACCTGCATCTTGCTGACCAACCTCTCCATCTTTAACTTGGAAGGTAGGGTTCCTTCCTCCAGT
CACACTACAACTTATATTGTTCGAAATGCTTCTGCTCTGATCAAAGCCATGTTTTCCAGCCCTC
TTTTCACTGTCAACAGATATCCTTGTGCTGTCAGGTTTCTGTAGGGAAAATTTTGCCTTATAGT
CTTTAGACAGTTCCAGAATCTGTGCTGCTTCAGCTTGTTTGAAAATATGATCAGTATCTAAAGC
TGCAGGCAGTATGCTACAACCATTATTTTGACTTGATGAACCTTGCACGGAATTGTTCTTGAAT
CTAATTCTAAATTTGCGCTGTGGTGATGGATTAGCAGCTGCCATTGTACCATCCCTCCCAACAA
TAGAGCTGGAAACATGGTATTTTGACTGCTGTAATCGGTCAGGAGTGTCAGGAACCTCAAGAAT
CTCATCAGAATTCATGTCAGTCATATTCACTCTATTTATTTAAGTTGCAGAAACTTGCCCCTTC
AC
Conservation Information
Conserved circRNAs NA
PMCS 0.104780517
Functional Information
Coding potential Y
Potential coding position 131423498-131423537(-)
Potential amino acid sequence MTDMNSDEILEVPDTPDRLQQSKYHVSSSIVGRDGTMAAANPSPQRKFRIRFKNNSVQGSSSQN
NGCSILPAALDTDHIFKQAEAAQILELSKDYKAKFSLQKPDSTRISVDSEKRAGKHGFDQSRSI
SNNISCSVTGGRNPTFQVKDGEVGQQDAGHQSANFLDIGPGFPTIQVGKPGYRLCTRTTDKLKG
VTGADVCPGSSSGEVKGDLITNKVIAGPTSPLRVFPRRHVGQKRLVRNGCISPSNIAKTDAKVN
EKQEMCSLSEHLDHPHQPDAFDGGDVIDLTENSPIMTRQRSEVNNKLMSGHNMDTRAAKKLRTD
RFGRTLVRQSKCHANNSSCSEVSLSGLNNNGKGIDCDILDSDQTGEANLRG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b