Detail information of Zm00001d044222_circ_g.1


General Information
CircRNA Name Zm00001d044222_circ_g.1
ID in PlantcircBase zma_circ_001568
Alias circ698
Organism Zea mays
Position chr3: 222355276-222358096  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d044222
Parent gene annotation tetratricopeptide repeat (TPR)-containing protein
Parent gene strand +
Alternative splicing Zm00001d044222_circ_g.2 Zm00001d044222_circ_g.3
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d044222_T026:8
Zm00001d044222_T011:7
Zm00001d044222_T022:7
Zm00001d044222_T032:7
Zm00001d044222_T038:2
Zm00001d044222_T020:7
Zm00001d044222_T029:7
Zm00001d044222_T004:7
Zm00001d044222_T001:6
Zm00001d044222_T016:7
Zm00001d044222_T023:7
Zm00001d044222_T012:6
Zm00001d044222_T031:7
Zm00001d044222_T021:8
Zm00001d044222_T030:6
Zm00001d044222_T025:7
Zm00001d044222_T017:7
Zm00001d044222_T009:7
Zm00001d044222_T003:7
Zm00001d044222_T036:4
Zm00001d044222_T013:7
Zm00001d044222_T027:7
Zm00001d044222_T002:6
Zm00001d044222_T034:7
Zm00001d044222_T008:7
Zm00001d044222_T005:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTGGCCGCTTTGATGAATCTGAGAGCATATA
CAGATCCCTGCTTTTTATGAATCCTGATAACTACAAgaaatcctacgagactaagcaatataag
aaagggcttaaggctgcagattccatattaaaaaagtttccagagcatggtggtatgttgaagg
atatgttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATCCTACGAGACTAAGCAATATAAGAAAGGGCTTAAGGCTGCAGATTCCATATTAAAAAAG
TTTCCAGAGCATGGTGGTATGTTGAAGGATATGTTCTGGTTCTATTATTACCTCATACTGTTGT
ATTCACTTGTAACTTCCCTCTATGTCCCGTTTCATGTAGAAACACTATCAATGAAAGGTTTGAC
GCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGGTTATC
AATTATTGCAATGAATTCTCTGTTGTTGATGTGATGATTAAATGGGGTACAAGTTTCAGAACTC
AGAACTAACTAATAATAAACTTTTTGCAGAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTA
TGGTTTGCTTTATCGGTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTG
AGGATTGATCCAGATAACATAGAAATTCTTCGTGACTTGTCCCTTCTCCAGGTTGGCGTAAATT
AACAAGCGTTTTTTATTTATATTTTGGCAGTGGTGAGAGCATTCCCATTGAGTCACCAGGTCAC
GGGTTCGAAGCAGCCTCTCCGCATTTGTGGGGGGAAAGCTTGACTCGGTTTATCCCTCCCCCAG
ACTCCACTCATGTGGGAGCCTCCGTCACTGGGTCTGCCCTTCTTTTTTCTTTTGACACAATAGT
TTCCTACTTTCCTTAAGTGTAGCCTCAAACCCTCAATGAACCACTACCAATTAAGATGTGCCAC
ATTCCAGTCATATATGACTCACTTAATGTTCTGTGCATAGCTCATTACTATCATGAAATGGTCA
CTAAGCATTTTCGTCATTTTTGTTTTGGTCAAGGCACATGATTTTGTTCATTATCTTATTGCTG
AACATGTAAAGCTAAAGACAGATAATACATAATAGCTGCTGTTCGAATTTGTAACTTGTGTTGG
CACCACTACTTTATACACAACTGCAGATTTCTGTTTGAACTCATCACTGTTATCCTTCTAAAAT
GTATAATGCTTATCTAGACTTCAGTTCTTATTTTAAGAACAGAATTTTCTTTGCCCTCTAATAT
TTTATTTTTCATCTTTTACACAGGCACAGATGAGGGACTTGTCTGGCTTTGTTGAGACTAGGCA
ACAACTTTTGTCGTTAAAGCCAAATCACCGCATGAACTGGATTGGTTTTGCGGTTGCTCATCAT
TTGAATTCTAAGTATGCCACTTTCTAGTCGATGTCGATTAGAACCAATGCATAATATGTCTTGG
AACACTACTGAATTTTTATATGCTACATATGCTATGGTGAAAGTACGGTAGCAAACTTCATCCC
GATTCCCGAACATTGTTGAGTGTGCACTGTAAGCAATTGAAGTAGTACACGGTATAAAGTGCGA
GCTGAATACAATCTTCTTGGCTCATGGGTTCCTTTATCATGTCAATTATTTGATTGCTCTTTGT
CATCATTGCAAAACATACTTTGTATAATATATGGCTTTTTCATTTTTTGGCATATTGGTGTTCT
TTTCTTTTAAGTGTGTAGATAGCCTAAAGGTCCATTAGTCCAGGGTTTGCACAGATGTCTCTGC
CTCACTTGTATATACCTTATTTCTTATAATTGAGCTGTACAGCCTGAAGATATTTTTCTTGTGA
TCCAAACCTGACGACTTACGATTTTGTTTGTATTCTTTTATATCAGATGGATAAACTTGTTCAT
TTATTTGTGATCTATGTGCTAAAGCTTATGATTAAGACAAAGCATTTACTGCATGAAAGAATTA
ATCACTTAACGTGGTTGTTTGACTTGGAACTGATACTGATTGTCACTTGCAGTTCTTCCAAGGC
AGTAGAAGTATTGGAGGCATACGAGGGAACACTGGAAGATGATTATCCTCCAGAGAATGAGCGA
TATGAACACAATGAAATGCTGCTGTATAAGGTTTGTGTTTCTTGAATAGGATTGCAATTTCTTT
TTATTAGTATTGTATCAGAAAAAATGTTTAGCATTGGTTCATGTTCTTTCTGGCCATTGTTCTA
TTTATGTCCTTTGGCTTTTGCTATAAAATAATATTTGATTGCCAATTTTGTATTACTAGATGTT
AATCGAGAACTTGTGCTCATTTGTTTTGCTTATTGTTGATGGTAGGATGCAATATTTCTTTTTG
TTTTAACTTCATGCCATCTAGATTTGTTGATTTATTATTTTAGTTTAGTATACTTTTTAGCATT
TGGTGTCTGTTTTTGTTCACCGTATAGTATTCTGTTCAATTGCTCTACATCCACCTTCCATGTT
GTGTGAAGCTTGTGGTTTGAGTTATGAAATACTCAAATAAGTGGTACCTAATTATTTTCTATTT
TTGATGGCATTGGTTCACACGTTATGACCATGTTCATTTCTTTAGCTTGCTATTATTCTGCTGA
TAACTTACAAGTTCATGCTATGCGTCTATAATGCAAATATATGTTGCAGTCATGATTCCGTGTA
ATCTTATTGTCATTTTTAACAGATATCATTGTTTGAAGAATGTGGGATGCTAGACAGAGCCCTT
GAGGAAATGCAGAAGAAGGAGAGCAAAATTGTGAGTCATATCCTTCTATTTTATGTTGCTTGTA
TGTGGTGGTTGTTGGGGACCTTTGAAGGTGATGTCTGAATAATTATGTTTTGTGCTTGTTCATG
TCAATTTTGTCTGCTAGGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAA
ACTTGGCCGCTTTGATGAATCTGAGAGCATATACAGATCCCTGCTTTTTATGAATCCTGATAAC
TACAA
Conservation Information
Conserved circRNAs NA
PMCS 0.048008481
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b