Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025830_circ_g.2 |
ID in PlantcircBase | zma_circ_010328 |
Alias | zma_circ_0000063 |
Organism | Zea mays |
Position | chr10: 131197900-131202723 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d025830 |
Parent gene annotation |
dicer-like 103 |
Parent gene strand | - |
Alternative splicing | Zm00001d025830_circ_g.1 Zm00001d025830_circ_g.3 Zm00001d025830_circ_g.4 Zm00001d025830_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d025830_T004:7 Zm00001d025830_T050:7 Zm00001d025830_T042:7 Zm00001d025830_T061:7 Zm00001d025830_T015:7 Zm00001d025830_T010:7 Zm00001d025830_T062:7 Zm00001d025830_T055:7 Zm00001d025830_T081:6 Zm00001d025830_T078:4 Zm00001d025830_T054:7 Zm00001d025830_T043:7 Zm00001d025830_T082:6 Zm00001d025830_T031:7 Zm00001d025830_T048:7 Zm00001d025830_T059:7 Zm00001d025830_T033:7 Zm00001d025830_T032:7 Zm00001d025830_T027:7 Zm00001d025830_T014:7 Zm00001d025830_T028:7 Zm00001d025830_T001:6 Zm00001d025830_T018:4 Zm00001d025830_T072:7 Zm00001d025830_T068:7 Zm00001d025830_T026:7 Zm00001d025830_T084:5 Zm00001d025830_T008:7 Zm00001d025830_T052:7 Zm00001d025830_T013:7 Zm00001d025830_T006:4 Zm00001d025830_T057:7 Zm00001d025830_T030:7 Zm00001d025830_T009:2 Zm00001d025830_T025:7 Zm00001d025830_T012:6 Zm00001d025830_T056:7 Zm00001d025830_T011:7 Zm00001d025830_T074:5 Zm00001d025830_T002:7 Zm00001d025830_T045:5 Zm00001d025830_T020:7 Zm00001d025830_T047:7 Zm00001d025830_T038:7 Zm00001d025830_T021:7 Zm00001d025830_T083:6 Zm00001d025830_T034:7 Zm00001d025830_T049:7 Zm00001d025830_T064:2 Zm00001d025830_T079:2 Zm00001d025830_T060:6 Zm00001d025830_T080:4 Zm00001d025830_T007:7 Zm00001d025830_T017:7 Zm00001d025830_T077:4 Zm00001d025830_T040:7 Zm00001d025830_T019:6 Zm00001d025830_T044:7 Zm00001d025830_T051:7 Zm00001d025830_T003:7 Zm00001d025830_T069:3 Zm00001d025830_T037:7 Zm00001d025830_T039:7 Zm00001d025830_T065:7 Zm00001d025830_T036:7 Zm00001d025830_T075:4 Zm00001d025830_T016:7 Zm00001d025830_T041:7 Zm00001d025830_T024:7 Zm00001d025830_T023:7 Zm00001d025830_T053:7 Zm00001d025830_T005:7 Zm00001d025830_T070:7 Zm00001d025830_T066:7 Zm00001d025830_T063:7 Zm00001d025830_T029:7 Zm00001d025830_T073:7 Zm00001d025830_T035:5 Zm00001d025830_T058:7 Zm00001d025830_T046:7 Zm00001d025830_T067:5 Zm00001d025830_T076:6 Zm00001d025830_T071:7 Zm00001d025830_T022:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.153767683 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
131202680-131197953(+) 131202712-131202709(-) |
Potential amino acid sequence |
MILFTKTMHFMFSSNLCSLVVGYEADYADRRVA*(+) MKCIVFVKRIIVARVVVQILQNLKCLDFWRCEFLVGCHSGLRNMSRDKMSSIIEKFSSGEVNLL VATSVGEEGLDIQTCCLVVRFDLPETVNSFIQSRGRARMSKSKYVFLLERGNHSQEKLLDDYIT GEIIMDKEINLRTSNDMFNCLEENIYRVNDTGASISTACSVSLLHRYCDNLPRDIFFVPSPSFF FVDDVDGIVCKLILPPNAAFRQVNGQPCPSKDEAKRDACLKACIKLHELGALTDFLLPGQGSRK IKVSTTNNSESNKDDDESFREELYEMLIPAVLRPSRCKLDSSFKLHFYYIEFIPIPADRRYQMF GLFVINRLPEESEKLDVELHLARARIVKAGIKYLGKIEFNKEEMILAHNFQEMFLKVLLDRSEF TPSYILLGNDGALDMDSTFYLLLPIKQKFYGDNMIDWPAVKRCLSSPAFQDPMGLSLHDSYLPN ESLKLLGGTYNKADVIGSLVYTPHTDLFFFVDAILDGTNAKSELNGATYAEHFKQRLHIKLSHP EQPLLKAKQLFCLRNLLHNRQLESTGWRKT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |