Detail information of BGIOSGA004100_circ_g.4


General Information
CircRNA Name BGIOSGA004100_circ_g.4
ID in PlantcircBase osi_circ_010433
Alias Chr01:27258318_27258957(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 29180142-29180781  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA004100
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA004100_circ_g.1 BGIOSGA004100_circ_g.2 BGIOSGA004100_circ_g.3 BGIOSGA004100_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA004100-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGATATAGGTTTACTAATGCAATTGCCTGTTGCAGGTGGGTGTGGGATTTCTTGCGCAGTAT
TTGATCAAACCTATGCTGGGATTTGCTATTGCCATGgctaacatatccagtaatctgccagaga
gcattcctagtgaagcaaaccagtacgagaaaatagttgagctgcttaccactcttttccctgt
ctgggtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTAACATATCCAGTAATCTGCCAGAGAGCATTCCTAGTGAAGCAAACCAGTACGAGAAAATAG
TTGAGCTGCTTACCACTCTTTTCCCTGTCTGGGTAAGTTGATTTGGGAGCATTTGAGGATTTTA
TCTGCCCTTTTTTAGCTTCTAGTTCTGTTACATTTGGTGGTTTGTAAAGCAAATATTAAAAAAT
GTACTAAGGCAGAGCTCACCTTTTGCAGGTCATATTAGGTACCATTATTGGCATCTACAAGCCA
TCGATGGTAAAATTTCTAACTTGACAATACCCATTACTGTCTGTACTCAACAGCAAATGCCACA
GAAACTGACTTTATAGTTTTCTTGGAAAACTTTCAGGTTACCTGGTTGGAGACTGATCTTTTCA
CTGTGGGCCTAGGATTCCTAATGCTATCAATGGGACTAACATTGACCTTCGAAGATTTCAGGAG
ATGCATGAGGAATCCATGGACTGTATGTTTCTGCTCCTGAACGTCTTCTCTTAAAGAAATAGTG
ATTATTTTTCTGTACTTGAGGCCTCCAACTTGATATAGGTTTACTAATGCAATTGCCTGTTGCA
GGTGGGTGTGGGATTTCTTGCGCAGTATTTGATCAAACCTATGCTGGGATTTGCTATTGCCATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021